Detailed information of component protein
Summary
| Component ID | T6CP015933 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01282  (Type i3) |
| Strain | Kosakonia oryzae strain KO348 |
| Replicon | chromosome |
| Sequence | Protein sequence (175 a.a.); Nucleotide sequence (525 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | UG97_RS09180 |
| Coordinate (Strand) | 183934..184458 (-) |
| NCBI ID | WP_016495653.1 |
| RefSeq | NZ_JZLI01000006 |
| Uniprot ID | R9VK09_9ENTR |
| KEGG ID | enr:H650_00785 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 3.4e-58 | 12..161 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-174 | MAISNSGQKFIARNRAPRVQIEYDVEVYGAERKIQLPFVMGVMADLVGKPVENLPSIEDRKFLEIDVDNFDERMKALKPRVAFNVDNTLTGEGRLNVDLTFDSMDDFLPDAVARKVEPLNKLLEARTQLSNLLTYMDGKNGAEELIAKVLQDPTLLKSLSQLPNSEDSAQGKEE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9958 | - | - |
Protein sequence: 175 a.a.
>T6CP015933 NZ_JZLI01000006:c184458-183934 [Kosakonia oryzae] [TssB]
MAISNSGQKFIARNRAPRVQIEYDVEVYGAERKIQLPFVMGVMADLVGKPVENLPSIEDRKFLEIDVDNFDERMKALKPR
VAFNVDNTLTGEGRLNVDLTFDSMDDFLPDAVARKVEPLNKLLEARTQLSNLLTYMDGKNGAEELIAKVLQDPTLLKSLS
QLPNSEDSAQGKEE*
MAISNSGQKFIARNRAPRVQIEYDVEVYGAERKIQLPFVMGVMADLVGKPVENLPSIEDRKFLEIDVDNFDERMKALKPR
VAFNVDNTLTGEGRLNVDLTFDSMDDFLPDAVARKVEPLNKLLEARTQLSNLLTYMDGKNGAEELIAKVLQDPTLLKSLS
QLPNSEDSAQGKEE*
Nucleotide sequence: 525 bp
>T6CP015933 NZ_JZLI01000006:c184458-183934 [Kosakonia oryzae] [TssB]
ATGGCAATAAGTAACAGTGGTCAGAAATTTATCGCCCGCAACCGTGCCCCCCGCGTTCAGATTGAGTACGACGTGGAAGT
GTACGGCGCGGAGCGCAAAATCCAGCTTCCGTTTGTGATGGGCGTAATGGCGGATCTGGTAGGGAAACCGGTGGAGAACT
TACCTTCTATTGAGGATCGTAAATTCCTCGAAATCGACGTCGACAACTTCGACGAACGCATGAAAGCGCTGAAACCGCGC
GTGGCGTTCAACGTCGACAACACCCTGACCGGCGAAGGCCGTCTGAACGTCGATTTAACTTTCGACAGCATGGATGACTT
CCTGCCGGACGCGGTGGCGCGCAAAGTTGAGCCGCTGAACAAGCTGCTGGAAGCGCGTACTCAGCTCTCCAACCTGCTGA
CCTACATGGACGGCAAAAACGGCGCGGAAGAGTTGATTGCCAAAGTGTTGCAGGATCCAACCCTGCTGAAATCGCTCAGC
CAGTTACCGAACAGTGAAGACAGTGCGCAAGGTAAAGAGGAGTAA
ATGGCAATAAGTAACAGTGGTCAGAAATTTATCGCCCGCAACCGTGCCCCCCGCGTTCAGATTGAGTACGACGTGGAAGT
GTACGGCGCGGAGCGCAAAATCCAGCTTCCGTTTGTGATGGGCGTAATGGCGGATCTGGTAGGGAAACCGGTGGAGAACT
TACCTTCTATTGAGGATCGTAAATTCCTCGAAATCGACGTCGACAACTTCGACGAACGCATGAAAGCGCTGAAACCGCGC
GTGGCGTTCAACGTCGACAACACCCTGACCGGCGAAGGCCGTCTGAACGTCGATTTAACTTTCGACAGCATGGATGACTT
CCTGCCGGACGCGGTGGCGCGCAAAGTTGAGCCGCTGAACAAGCTGCTGGAAGCGCGTACTCAGCTCTCCAACCTGCTGA
CCTACATGGACGGCAAAAACGGCGCGGAAGAGTTGATTGCCAAAGTGTTGCAGGATCCAACCCTGCTGAAATCGCTCAGC
CAGTTACCGAACAGTGAAGACAGTGCGCAAGGTAAAGAGGAGTAA