Detailed information of effector


Summary

Effector ID EFF01840 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (870 a.a.); Nucleotide sequence (2610 bp)
Description VgrG
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) UG97_RS09005
Coordinates (Strand) 149587..152196 (-)
NCBI ID 780193605
RefSeq NZ_JZLI01000006
Uniprot ID UPI0005F098C1
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 8.8e-84 22..326
Phage_base_V PF04717.14 1.3e-14 381..448
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-869 MANRITATLPVGDLLFWKLSGREALSESFTLALTVLGTDARADRSKLLGQSATINIPTQGTGTRYINGKITRVAVSAVELSGTRYAVYQLTVEPDLWPMKRDRNLRIFQGQTAPQIVKTLLGEYQVNVEDKLTGSYRTWDYCVQYQESSLDFISRLMELEGIAYHFRHEADRHVLVLTDAATEHQPFSGYETIPYHQTPSGGSTDEEGISQWALEDSVTPGIYSLDDYDFRKPNAWLFQARQNPASPQPGSIDVYDWPGRFVEHGHGEYYARIRQERWQVEHQQIQGTATAVGVAPGNTFALYNAPFFSDNGEYLTTEANYFFEENRYASGSDGETVHRIDFTVIPSSVVFRPAAVTAWPKTYGPQTAKVVGPQGESIWTDKYGRVKVKFHWDRLAKGDDTSSCWVRVSSAWAGQGFGGVQIPRVGDEVVIDFINGDPDRPIVTGRVYNEASMPPWALPAAATQMGFLSRSKDGSVDNANALRFEDKAGEEQVWIQAERNMDVHVKNDASRSIGSNHSHYVRKNELYRVETNQTQAVKGQTEILTGKGKLDAVVEQFILASGTQLRLVSGHSAIELNANGKINLIGKSFNFFVEEDGHITTGGKLHLNAPGTKAPTTAPGADHKGNINSAVQAKFSPQGNVQHAAPVAAAPAGAAKPVTKYKAPPPLKGDYVFSNEKSKSQFMPFSDGVVKKINSSPKMQSDLKKLMDDQWNISPNVPGGGSWTDTKNKVMVLDPESMADDNEAVMTLAHEVGHATSPYKNDFSSKSNFVNGMLKDEGQATLNEIQVRREIYHNSGIDIGSMTDSSNEMKYIQAFKDMDSGKITRDEASKAIGEIYRRGEVASGSTTNEVYEDHYGNMYDDYMQGKAPH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9046 - -


  Protein sequence: 870 a.a.    .

>EFF01840 NZ_JZLI01000006:c152196-149587 (Unknown) [Kosakonia oryzae]
MANRITATLPVGDLLFWKLSGREALSESFTLALTVLGTDARADRSKLLGQSATINIPTQGTGTRYINGKITRVAVSAVEL
SGTRYAVYQLTVEPDLWPMKRDRNLRIFQGQTAPQIVKTLLGEYQVNVEDKLTGSYRTWDYCVQYQESSLDFISRLMELE
GIAYHFRHEADRHVLVLTDAATEHQPFSGYETIPYHQTPSGGSTDEEGISQWALEDSVTPGIYSLDDYDFRKPNAWLFQA
RQNPASPQPGSIDVYDWPGRFVEHGHGEYYARIRQERWQVEHQQIQGTATAVGVAPGNTFALYNAPFFSDNGEYLTTEAN
YFFEENRYASGSDGETVHRIDFTVIPSSVVFRPAAVTAWPKTYGPQTAKVVGPQGESIWTDKYGRVKVKFHWDRLAKGDD
TSSCWVRVSSAWAGQGFGGVQIPRVGDEVVIDFINGDPDRPIVTGRVYNEASMPPWALPAAATQMGFLSRSKDGSVDNAN
ALRFEDKAGEEQVWIQAERNMDVHVKNDASRSIGSNHSHYVRKNELYRVETNQTQAVKGQTEILTGKGKLDAVVEQFILA
SGTQLRLVSGHSAIELNANGKINLIGKSFNFFVEEDGHITTGGKLHLNAPGTKAPTTAPGADHKGNINSAVQAKFSPQGN
VQHAAPVAAAPAGAAKPVTKYKAPPPLKGDYVFSNEKSKSQFMPFSDGVVKKINSSPKMQSDLKKLMDDQWNISPNVPGG
GSWTDTKNKVMVLDPESMADDNEAVMTLAHEVGHATSPYKNDFSSKSNFVNGMLKDEGQATLNEIQVRREIYHNSGIDIG
SMTDSSNEMKYIQAFKDMDSGKITRDEASKAIGEIYRRGEVASGSTTNEVYEDHYGNMYDDYMQGKAPH*

  Nucleotide sequence: 2610 bp    .

>EFF01840 NZ_JZLI01000006:c152196-149587 (Unknown) [Kosakonia oryzae]
ATGGCGAACAGGATCACGGCGACGTTACCCGTCGGGGACTTACTTTTCTGGAAACTCTCCGGGCGCGAAGCGCTGTCGGA
GTCATTTACGCTGGCGCTGACGGTACTGGGCACCGATGCGCGGGCAGACCGCAGCAAGCTGCTGGGGCAATCCGCAACCA
TCAATATTCCCACCCAGGGAACGGGTACGCGCTATATCAACGGCAAAATCACCCGCGTGGCGGTGAGCGCCGTTGAACTT
TCGGGGACGCGTTACGCGGTGTACCAGCTCACCGTGGAGCCGGATTTGTGGCCGATGAAACGCGACCGCAACCTGCGTAT
CTTCCAGGGCCAGACTGCGCCGCAGATTGTGAAAACGCTGCTCGGCGAATATCAGGTGAACGTGGAAGATAAGCTGACCG
GCAGTTACCGCACCTGGGATTACTGCGTGCAGTACCAGGAATCGAGCCTCGATTTCATCAGCCGTCTGATGGAGCTTGAG
GGCATCGCCTACCATTTCCGCCACGAAGCCGACCGCCATGTGCTGGTGCTGACCGACGCGGCGACCGAACATCAACCCTT
CAGCGGCTACGAAACCATTCCCTATCACCAGACGCCGTCCGGCGGCAGCACGGATGAAGAGGGTATCAGCCAGTGGGCGC
TGGAGGACAGCGTGACGCCGGGTATTTACAGCCTCGACGATTACGACTTCCGCAAGCCGAACGCGTGGCTGTTCCAGGCG
CGGCAGAACCCGGCATCACCGCAGCCGGGCAGCATTGACGTGTATGACTGGCCGGGGCGTTTTGTCGAGCACGGTCACGG
GGAGTATTACGCGCGTATCCGCCAGGAGCGCTGGCAGGTGGAGCACCAGCAGATTCAGGGCACCGCCACGGCGGTTGGTG
TCGCACCGGGAAACACCTTTGCGCTGTATAACGCGCCGTTTTTCAGCGATAACGGCGAGTACCTGACCACCGAAGCGAAC
TACTTTTTCGAGGAAAACCGCTACGCCAGCGGCTCCGACGGCGAAACGGTGCACCGCATTGATTTCACCGTCATTCCGTC
GTCGGTGGTGTTCCGCCCGGCGGCGGTGACGGCGTGGCCGAAAACCTACGGTCCGCAGACGGCGAAAGTGGTCGGCCCGC
AGGGCGAAAGCATCTGGACGGATAAATATGGCCGGGTGAAGGTGAAATTCCACTGGGATCGTCTGGCAAAAGGCGATGAC
ACCAGCTCCTGCTGGGTGCGTGTGTCGAGTGCCTGGGCGGGGCAGGGCTTCGGCGGGGTGCAAATCCCGCGCGTGGGCGA
CGAAGTGGTGATCGACTTTATCAATGGCGACCCGGACCGGCCGATCGTTACCGGGCGCGTCTATAACGAAGCGAGTATGC
CGCCGTGGGCATTACCTGCTGCTGCCACGCAGATGGGTTTCCTCAGCCGCTCGAAAGATGGTTCGGTCGATAACGCCAAC
GCCCTGCGCTTTGAAGACAAGGCGGGCGAAGAGCAAGTGTGGATCCAGGCGGAACGAAACATGGATGTTCACGTCAAAAA
CGACGCCTCGCGCTCGATCGGCAGTAACCACAGCCACTATGTACGTAAAAATGAGCTGTACCGCGTCGAAACGAATCAGA
CGCAGGCCGTGAAAGGGCAAACGGAAATCCTTACCGGCAAAGGCAAGCTCGATGCGGTGGTGGAGCAGTTTATTCTGGCT
TCCGGGACGCAACTGCGGCTGGTATCCGGTCACAGCGCCATTGAGCTTAATGCGAACGGCAAAATCAACCTGATTGGTAA
ATCCTTTAACTTCTTTGTCGAAGAAGATGGGCACATTACCACCGGCGGTAAGTTGCATCTCAATGCTCCCGGAACAAAAG
CCCCGACTACCGCGCCAGGAGCTGACCATAAAGGGAATATTAACTCTGCGGTACAGGCGAAATTTTCCCCGCAGGGTAAC
GTGCAGCACGCGGCCCCTGTGGCAGCGGCTCCGGCGGGGGCGGCAAAACCGGTGACGAAATACAAAGCGCCGCCGCCGCT
GAAGGGGGATTATGTTTTTAGTAACGAGAAGAGTAAAAGTCAATTCATGCCGTTCAGTGATGGCGTCGTGAAGAAAATAA
ACAGTTCCCCCAAAATGCAGAGCGATTTAAAAAAACTCATGGATGATCAGTGGAATATATCACCTAACGTTCCAGGGGGT
GGAAGCTGGACCGATACGAAAAATAAAGTCATGGTATTAGATCCGGAAAGTATGGCGGATGATAATGAAGCGGTCATGAC
GTTAGCGCATGAAGTCGGCCATGCGACCAGCCCTTATAAAAATGACTTCAGCTCAAAAAGTAATTTTGTTAACGGCATGC
TTAAAGATGAAGGGCAGGCCACGCTGAATGAAATTCAGGTCCGCCGCGAAATTTATCATAATAGCGGTATAGATATTGGC
TCAATGACTGACTCATCGAATGAGATGAAATATATCCAGGCATTTAAAGATATGGACAGCGGAAAAATAACCCGCGATGA
AGCCAGTAAAGCAATTGGAGAAATTTACCGCAGGGGTGAAGTTGCATCCGGTTCAACTACCAATGAAGTTTATGAAGACC
ATTACGGGAATATGTACGATGACTATATGCAAGGTAAGGCACCTCACTAA