Detailed information of component protein


Summary

Component ID T6CP015928
Component protein type TssF
T6SS ID (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (624 a.a.); Nucleotide sequence (1872 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS09115
Coordinate (Strand) 170993..172864 (-)
NCBI ID 780193678
RefSeq NZ_JZLI01000006
Uniprot ID UPI0005F055F5
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.9e-223 1..620
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-623 MDSKLLEYYNRELAWLREMGQEFAARYPKVAGRLGMRGMDVSDPYVERLMEGFAFLTSRVQLKMDAEFPRFSQRLLEMVAPNYLAPTPSMAIAELQPDSAKGDLSNGFVVPRGTMMDSQVMKKNGVTCSYTTAHDVTLLPLKISQVELGGVPADLPLAQVGLSQRGAQSALRIRLSCDGPVNLSHLDFDRLEFFLSGPDMQALKLLELVMEHQVGILCQANGQKTPPLVLADDALRQEGFSADQALLPDDLRNFDGYRLLQEYFAFPSRFLFISLHGLRTMLAQSGEAKSFDIIILLDKADAQLERVVDKSHLALHCTPVINLFPKVAERQKLSDSLHEYHLVVDNIRPLDYEIYAVTKIHASIDGQRDEETFRPFWSSWSQDEGNYGAYFSLRREQRALSEHAQRYGTRTGYIGSEVFASLVDEQHAPWREELRYITAEVLCTSRDLPLMLQQEIGQFVLPDSLPVKTLQLRKGPTPPRPALAEGLSTWRLISQLQMNYLSLMDGEDGEGAAALRQLLGLYTRLAEAPVARQIEGVRHCVLEPVHRRVPEPGPIVFARGIGITLTVDEQAFSGFSPYLFGSVLERVFARLVGMNSFTEFTLKSQQRGEVGYWPPRMGKRALI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 624 a.a.    

>T6CP015928 NZ_JZLI01000006:c172864-170993 [Kosakonia oryzae] [TssF]
MDSKLLEYYNRELAWLREMGQEFAARYPKVAGRLGMRGMDVSDPYVERLMEGFAFLTSRVQLKMDAEFPRFSQRLLEMVA
PNYLAPTPSMAIAELQPDSAKGDLSNGFVVPRGTMMDSQVMKKNGVTCSYTTAHDVTLLPLKISQVELGGVPADLPLAQV
GLSQRGAQSALRIRLSCDGPVNLSHLDFDRLEFFLSGPDMQALKLLELVMEHQVGILCQANGQKTPPLVLADDALRQEGF
SADQALLPDDLRNFDGYRLLQEYFAFPSRFLFISLHGLRTMLAQSGEAKSFDIIILLDKADAQLERVVDKSHLALHCTPV
INLFPKVAERQKLSDSLHEYHLVVDNIRPLDYEIYAVTKIHASIDGQRDEETFRPFWSSWSQDEGNYGAYFSLRREQRAL
SEHAQRYGTRTGYIGSEVFASLVDEQHAPWREELRYITAEVLCTSRDLPLMLQQEIGQFVLPDSLPVKTLQLRKGPTPPR
PALAEGLSTWRLISQLQMNYLSLMDGEDGEGAAALRQLLGLYTRLAEAPVARQIEGVRHCVLEPVHRRVPEPGPIVFARG
IGITLTVDEQAFSGFSPYLFGSVLERVFARLVGMNSFTEFTLKSQQRGEVGYWPPRMGKRALI*

  Nucleotide sequence: 1872 bp    

>T6CP015928 NZ_JZLI01000006:c172864-170993 [Kosakonia oryzae] [TssF]
ATGGACAGCAAATTACTCGAATATTACAACCGCGAACTGGCCTGGCTGCGCGAAATGGGTCAGGAATTCGCCGCACGCTA
CCCGAAAGTTGCTGGGCGTCTGGGTATGCGCGGCATGGACGTCTCTGACCCGTATGTCGAACGCCTGATGGAAGGTTTTG
CCTTTCTGACCTCGCGCGTGCAGTTAAAAATGGACGCCGAGTTCCCGCGTTTCTCCCAGCGTTTGCTGGAAATGGTCGCG
CCGAATTACCTTGCGCCCACGCCGTCCATGGCGATTGCCGAACTGCAACCGGACAGCGCGAAAGGCGATTTGAGCAACGG
TTTTGTGGTGCCGCGCGGCACCATGATGGACAGCCAGGTGATGAAAAAGAACGGCGTCACCTGTAGTTACACCACCGCGC
ATGATGTCACGCTGCTGCCGCTGAAAATCAGCCAGGTGGAACTGGGCGGTGTGCCCGCCGATCTGCCGCTGGCGCAGGTC
GGTTTAAGCCAGCGCGGGGCGCAAAGCGCACTGCGTATTCGCCTGAGTTGCGACGGCCCGGTAAACCTCAGCCATCTTGA
TTTCGACCGTCTGGAGTTCTTCTTAAGCGGCCCGGATATGCAGGCGCTGAAGCTCCTCGAGCTGGTGATGGAGCATCAGG
TCGGTATTCTGTGCCAGGCGAACGGGCAGAAAACCCCGCCGCTGGTGCTGGCCGACGATGCGTTGCGCCAGGAAGGGTTC
AGCGCAGACCAGGCTCTGCTGCCGGACGATCTGCGCAACTTTGACGGCTACCGTCTGTTACAGGAGTATTTTGCTTTTCC
GTCGCGTTTCCTGTTTATCAGCCTGCATGGCTTGCGCACAATGCTGGCGCAAAGCGGCGAAGCGAAGTCCTTCGATATCA
TCATTCTGCTCGACAAAGCCGATGCGCAGCTTGAACGGGTGGTGGATAAAAGCCACCTCGCGCTGCACTGCACGCCGGTG
ATTAACCTGTTCCCGAAAGTGGCGGAACGTCAGAAGCTGAGCGACAGCCTGCATGAGTACCATCTGGTGGTCGATAACAT
TCGTCCGCTGGATTACGAGATTTACGCCGTTACCAAAATTCACGCCAGCATTGATGGTCAGCGTGATGAGGAAACTTTTC
GCCCGTTCTGGAGCAGTTGGAGTCAGGACGAGGGCAATTATGGCGCTTACTTTTCGCTGCGTCGCGAACAGCGTGCGTTA
TCGGAACATGCGCAGCGTTACGGCACGCGTACCGGCTACATCGGTTCGGAAGTGTTCGCCTCGCTGGTGGATGAACAGCA
TGCGCCGTGGCGGGAAGAGTTACGCTACATCACCGCCGAAGTGCTGTGCACCAGCCGCGATCTGCCGCTGATGTTGCAGC
AGGAGATTGGTCAGTTTGTGCTGCCGGATTCGCTGCCGGTTAAAACATTACAACTGCGCAAAGGCCCGACACCGCCGCGT
CCGGCGCTGGCAGAAGGGTTGAGCACCTGGCGGCTGATCAGCCAGTTGCAGATGAACTATTTAAGCCTGATGGATGGCGA
AGACGGCGAAGGCGCTGCGGCGCTGCGCCAGTTGCTGGGGCTTTATACCCGGCTGGCGGAAGCGCCGGTCGCGCGTCAGA
TTGAAGGCGTACGTCACTGCGTGCTCGAACCGGTACATCGCCGCGTGCCGGAACCGGGACCGATTGTTTTCGCGCGCGGT
ATTGGCATTACCCTGACGGTCGATGAGCAGGCGTTCTCCGGCTTCAGTCCGTACCTGTTTGGCAGCGTGCTGGAGCGCGT
TTTTGCCCGTCTGGTGGGCATGAACAGCTTTACCGAGTTCACGCTTAAGAGCCAGCAGCGCGGGGAAGTGGGTTACTGGC
CGCCGCGCATGGGCAAGAGGGCGCTGATATGA