Detailed information of component protein


Summary

Component ID T6CP015926
Component protein type TssH
T6SS ID (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (873 a.a.); Nucleotide sequence (2619 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS09105
Coordinate (Strand) 167221..169839 (-)
NCBI ID 780193871
RefSeq NZ_JZLI01000006
Uniprot ID UPI0005EE0339
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.2e-39 603..768
AAA_lid_9 PF17871.3 4.3e-26 364..458
ClpB_D2-small PF10431.11 1.1e-13 776..852
AAA PF00004.31 2.2e-09 224..356
Clp_N PF02861.22 5.4e-05 27..75
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-872 MSEISRAVLFGKLDTLLFTSLESATAFCKLRGNPYVELVHWLHQLMQQTDGDLQQVIRHFSLDEEALTRDIVAALDKLPRGASSVSDLSEHIDTAVERAWVYGSLKYGVTRIRGGHLLAGILKTWSLANVLKGISPQFERISADALLDNFDAIFANSKESQQVTVALNDDAGAGVPQQQGTLAQYGQDLTARARDGKIDPVVGRDEEIRQMVDILMRRRQNNPLLTGEAGVGKTAVVEGLALRIAAGDVPEPLVDVQLWLLDIGMLQAGAGMKGEFEARLQSLINEVQSSPTPIILFIDEIHTLIGAGGQQGTGDAANLLKPALARGQLRTIGATTWAEYKKYIEKDPALTRRFQTVQVAEPDEEKAVLMLRSTVSALEKHHRVLLLDEAVVAAVKLSHRYIPARQLPDKAVALLDTACARVAVSQSSPPPQLEDCLHRIAALDVEVEIANREAKMATGESDRVEKLQVELEKLAQQRDELTARWEQEQALVDAIIALRAQLHTSPEEAQADIRATLTQQQAELRALQGDAPLLFTSVDANVVAAVVSDWTGIPLGRMVKNEIDAVLKLADTLNERVIGQRHGLELIAKRVQTSRARLDDPNKPVGVFMLCGPSGVGKTETALALAESLYGGEQNVITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMEDGEGRHIDFRNTIIILTSNVGTELITGMCADPELMPEPDALRDALRPPLLQVFPPALLGRLLVVPYYPLSDEMLAMIVRLQLKRIQRRLADNHGIVSEVDDSVVEQIVARCTEVESGGRMVDAILTNTLLPLMSQLLLDASARDEQYKRLRVTFEQGEFHCQFAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9600 - -


  Protein sequence: 873 a.a.    

>T6CP015926 NZ_JZLI01000006:c169839-167221 [Kosakonia oryzae] [TssH]
MSEISRAVLFGKLDTLLFTSLESATAFCKLRGNPYVELVHWLHQLMQQTDGDLQQVIRHFSLDEEALTRDIVAALDKLPR
GASSVSDLSEHIDTAVERAWVYGSLKYGVTRIRGGHLLAGILKTWSLANVLKGISPQFERISADALLDNFDAIFANSKES
QQVTVALNDDAGAGVPQQQGTLAQYGQDLTARARDGKIDPVVGRDEEIRQMVDILMRRRQNNPLLTGEAGVGKTAVVEGL
ALRIAAGDVPEPLVDVQLWLLDIGMLQAGAGMKGEFEARLQSLINEVQSSPTPIILFIDEIHTLIGAGGQQGTGDAANLL
KPALARGQLRTIGATTWAEYKKYIEKDPALTRRFQTVQVAEPDEEKAVLMLRSTVSALEKHHRVLLLDEAVVAAVKLSHR
YIPARQLPDKAVALLDTACARVAVSQSSPPPQLEDCLHRIAALDVEVEIANREAKMATGESDRVEKLQVELEKLAQQRDE
LTARWEQEQALVDAIIALRAQLHTSPEEAQADIRATLTQQQAELRALQGDAPLLFTSVDANVVAAVVSDWTGIPLGRMVK
NEIDAVLKLADTLNERVIGQRHGLELIAKRVQTSRARLDDPNKPVGVFMLCGPSGVGKTETALALAESLYGGEQNVITIN
MSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMEDGEGRHIDFRNTI
IILTSNVGTELITGMCADPELMPEPDALRDALRPPLLQVFPPALLGRLLVVPYYPLSDEMLAMIVRLQLKRIQRRLADNH
GIVSEVDDSVVEQIVARCTEVESGGRMVDAILTNTLLPLMSQLLLDASARDEQYKRLRVTFEQGEFHCQFAA*

  Nucleotide sequence: 2619 bp    

>T6CP015926 NZ_JZLI01000006:c169839-167221 [Kosakonia oryzae] [TssH]
ATGTCAGAAATCAGCCGCGCCGTTCTGTTCGGCAAACTCGATACGCTGTTATTTACCTCGCTGGAAAGCGCCACCGCCTT
TTGCAAGCTGCGTGGCAACCCGTATGTGGAGCTGGTTCACTGGCTGCATCAACTGATGCAACAGACGGACGGCGATCTGC
AACAGGTTATTCGCCACTTTTCGCTGGATGAAGAGGCGCTGACGCGCGATATCGTCGCGGCGCTGGACAAACTGCCGCGC
GGCGCAAGTTCGGTTTCCGACTTGTCAGAACACATTGATACCGCCGTTGAACGCGCGTGGGTATATGGCTCGTTAAAATA
TGGCGTGACGCGCATTCGTGGCGGCCATCTGCTGGCCGGGATCCTGAAAACCTGGAGTCTGGCGAACGTGCTGAAAGGCA
TTTCGCCGCAGTTTGAGCGTATCAGCGCCGATGCGTTGCTGGATAACTTCGACGCCATTTTCGCTAACAGCAAAGAGAGC
CAGCAGGTCACCGTGGCGCTGAACGATGACGCAGGAGCGGGCGTACCGCAGCAGCAGGGCACGCTGGCGCAGTATGGTCA
GGATCTGACCGCCCGGGCGCGCGACGGCAAAATCGACCCGGTAGTGGGGCGCGATGAAGAGATCCGCCAGATGGTCGATA
TCCTGATGCGTCGCCGCCAGAACAACCCGTTGCTGACCGGTGAAGCGGGCGTCGGTAAAACCGCGGTGGTTGAAGGACTG
GCGCTGCGCATTGCCGCAGGTGATGTGCCGGAACCGCTGGTGGATGTGCAACTGTGGCTGCTGGATATTGGCATGTTGCA
GGCGGGCGCGGGAATGAAGGGCGAATTTGAAGCGCGTTTACAGTCGCTGATTAACGAAGTGCAATCCAGCCCGACGCCGA
TCATTCTGTTTATCGACGAAATTCACACGCTGATTGGCGCCGGCGGCCAGCAGGGCACGGGCGATGCCGCCAACCTGCTG
AAACCGGCGCTGGCGCGTGGTCAGCTTCGCACCATCGGCGCGACCACCTGGGCGGAATACAAAAAATACATTGAGAAAGA
TCCGGCGCTGACCCGCCGTTTCCAGACCGTACAAGTCGCGGAACCAGACGAAGAAAAAGCCGTTCTGATGCTGCGCAGCA
CCGTTTCCGCCCTGGAAAAACACCACCGCGTGCTGCTGCTCGATGAAGCGGTTGTCGCGGCGGTGAAACTCTCGCACCGC
TACATTCCGGCGCGCCAGTTACCGGATAAAGCCGTTGCGCTGCTCGATACCGCCTGTGCGCGCGTCGCGGTAAGCCAAAG
TTCTCCGCCGCCGCAGCTGGAAGATTGCCTGCACCGCATCGCCGCGCTGGACGTGGAAGTTGAGATAGCCAACCGTGAAG
CGAAAATGGCGACCGGTGAAAGCGATCGCGTGGAAAAATTGCAGGTCGAGCTGGAAAAACTGGCGCAACAACGCGACGAA
CTGACGGCGCGCTGGGAGCAGGAGCAAGCGCTGGTTGACGCGATTATTGCGCTGCGCGCGCAGCTGCATACTTCGCCGGA
AGAGGCGCAGGCCGATATACGCGCCACGCTGACGCAACAGCAGGCCGAACTGCGTGCGCTACAGGGCGACGCGCCACTGC
TGTTTACCTCGGTGGATGCCAACGTGGTCGCCGCCGTGGTTTCCGACTGGACCGGCATCCCGCTGGGCCGGATGGTGAAA
AACGAAATCGACGCGGTGTTAAAACTGGCCGATACCCTGAACGAACGCGTAATTGGACAGCGCCACGGCCTGGAACTGAT
TGCCAAACGGGTACAGACCTCGCGTGCGCGCCTGGACGATCCGAACAAACCGGTGGGCGTCTTTATGCTGTGCGGCCCGT
CCGGTGTCGGTAAAACCGAAACCGCGCTGGCGCTGGCGGAGTCGCTGTACGGCGGCGAGCAGAACGTTATCACCATCAAC
ATGAGTGAGTTCCAGGAAGCACATACGGTTTCCACGCTGAAAGGTGCGCCTCCGGGCTATGTGGGTTACGGCGAAGGCGG
TGTGTTAACCGAAGCGGTGCGCCGCCGTCCTTACAGCGTGGTGCTGCTCGATGAGATCGAAAAAGCTCACCCGGATGTGC
ATGAAATCTTCTTCCAGGTGTTCGATAAAGGCTGGATGGAAGATGGCGAAGGCCGCCATATTGATTTCCGTAACACCATT
ATTATTCTCACCTCCAACGTCGGGACTGAGCTGATTACCGGCATGTGCGCCGATCCGGAACTGATGCCGGAACCGGACGC
CCTGCGCGACGCGCTGCGCCCGCCGCTGTTGCAGGTTTTCCCGCCCGCGCTGCTGGGCCGTTTGCTGGTGGTGCCGTACT
ACCCGCTCAGCGACGAGATGCTGGCGATGATTGTGCGCCTGCAGCTTAAACGCATTCAGCGCCGTCTGGCGGACAACCAC
GGGATTGTGTCGGAAGTGGACGACAGCGTGGTGGAACAAATTGTTGCCCGCTGCACGGAAGTCGAATCAGGCGGCCGTAT
GGTGGACGCCATCCTTACTAATACACTGCTGCCGCTGATGAGCCAGCTATTACTCGACGCCAGCGCGCGCGACGAGCAAT
ATAAGCGCTTACGGGTCACGTTTGAGCAGGGTGAGTTTCACTGTCAGTTTGCGGCGTAA