Detailed information of component protein


Summary

Component ID T6CP015930
Component protein type TagH
T6SS ID (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (602 a.a.); Nucleotide sequence (1806 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS09140
Coordinate (Strand) 176052..177857 (-)
NCBI ID 780193691
RefSeq NZ_JZLI01000006
Uniprot ID UPI0005EF488C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 6.4e-08 27..93
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-601 MRFTIITSKPGHQPPQSSCDFYPPGGTIGRGTDNNLVLPDNDRSISRLQAIVHIAGNGECRVTNRGNVTRVVLNDIPLERGRQVELQDGDILGIDEYRIEVTDLIQDTRPVTRMAEEMYPKPAQPQVAKPAPAPAQKNAPEGAPASVPTEIWDSLMQEFSISDSISSSRAKPQEAQNLNPFAAPKGPERNPEDPLSLLNNNEPLVTPKSLASDQLFNDEQLFKNDSIFNDSTPSALVPPVEPTQKSHAPDSDELDPLALFGGSGSTKQTRSDDPLGLLSGAVPLAHADELAAQKPAEPQPIITDLNTPEPPPTAQPIITELRPEDLSSTPLFADDAPLSAPEEVQEQQDYAGITLPTPQAVQRSAAQTPKGRLRIDPVQSNGTKSTPSVSTGDSGDVLKGELLDALLEGMGLSDMQPVPQFDKENMRQFGQMLSMFSQGTVALLSSRSILKRGVKADMTMVLDDANNPFKLLPSGKTVLMQMFGTRMPGFMPPKKSVRDALIDLQAHQLGMISGIRAIIAAMLQQFNPEQLEDDAKRDGATARLGVLSNRKAALWDYYVRTYAQTAGEIDDDFHTLFGEAFLHAYDMEVNQYKDSQSGSEE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8902 - -


  Protein sequence: 602 a.a.    

>T6CP015930 NZ_JZLI01000006:c177857-176052 [Kosakonia oryzae] [TagH]
MRFTIITSKPGHQPPQSSCDFYPPGGTIGRGTDNNLVLPDNDRSISRLQAIVHIAGNGECRVTNRGNVTRVVLNDIPLER
GRQVELQDGDILGIDEYRIEVTDLIQDTRPVTRMAEEMYPKPAQPQVAKPAPAPAQKNAPEGAPASVPTEIWDSLMQEFS
ISDSISSSRAKPQEAQNLNPFAAPKGPERNPEDPLSLLNNNEPLVTPKSLASDQLFNDEQLFKNDSIFNDSTPSALVPPV
EPTQKSHAPDSDELDPLALFGGSGSTKQTRSDDPLGLLSGAVPLAHADELAAQKPAEPQPIITDLNTPEPPPTAQPIITE
LRPEDLSSTPLFADDAPLSAPEEVQEQQDYAGITLPTPQAVQRSAAQTPKGRLRIDPVQSNGTKSTPSVSTGDSGDVLKG
ELLDALLEGMGLSDMQPVPQFDKENMRQFGQMLSMFSQGTVALLSSRSILKRGVKADMTMVLDDANNPFKLLPSGKTVLM
QMFGTRMPGFMPPKKSVRDALIDLQAHQLGMISGIRAIIAAMLQQFNPEQLEDDAKRDGATARLGVLSNRKAALWDYYVR
TYAQTAGEIDDDFHTLFGEAFLHAYDMEVNQYKDSQSGSEE*

  Nucleotide sequence: 1806 bp    

>T6CP015930 NZ_JZLI01000006:c177857-176052 [Kosakonia oryzae] [TagH]
ATGCGATTCACTATTATTACCAGTAAACCCGGTCATCAGCCGCCACAAAGTAGCTGCGACTTTTATCCCCCGGGCGGCAC
CATTGGCCGCGGCACGGACAACAATCTGGTGCTGCCGGACAACGACCGTTCCATTTCACGTTTGCAGGCGATTGTCCATA
TCGCCGGCAATGGCGAGTGCCGCGTCACCAACCGTGGCAACGTGACCCGCGTCGTACTGAATGACATCCCCCTTGAACGT
GGGCGTCAGGTTGAGCTGCAGGATGGCGATATTCTTGGCATCGATGAATACCGTATTGAAGTCACCGATCTGATCCAGGA
TACCCGTCCTGTCACCCGTATGGCGGAAGAGATGTATCCGAAGCCAGCGCAGCCGCAGGTGGCGAAACCGGCACCTGCTC
CGGCGCAGAAAAACGCGCCAGAAGGCGCACCGGCGTCCGTGCCGACGGAAATCTGGGACAGCCTGATGCAGGAGTTTTCC
ATCTCCGACAGCATCTCCAGCAGCCGTGCGAAACCGCAGGAAGCGCAAAATCTTAACCCGTTCGCCGCGCCGAAAGGGCC
GGAGCGCAACCCGGAAGATCCGCTGTCGCTGCTCAATAACAATGAACCGCTGGTGACGCCGAAATCGCTGGCCTCGGATC
AGCTGTTTAATGACGAACAGTTGTTTAAAAACGACAGCATCTTCAACGATTCCACGCCTTCTGCGCTGGTGCCGCCGGTT
GAACCGACACAAAAATCGCACGCGCCGGATAGCGACGAGCTCGATCCGCTGGCGCTGTTTGGCGGTAGCGGTAGCACGAA
GCAAACCCGCAGCGACGATCCGCTTGGCCTGCTGAGCGGCGCGGTGCCGCTGGCGCATGCCGATGAACTGGCGGCGCAGA
AACCGGCTGAACCGCAGCCGATCATTACCGATCTCAACACGCCGGAACCGCCGCCAACCGCTCAGCCGATTATTACCGAG
CTGCGCCCGGAAGATTTAAGTTCGACGCCGCTATTTGCCGACGACGCGCCGCTCTCCGCGCCGGAAGAGGTGCAGGAGCA
GCAGGATTACGCTGGTATCACGCTGCCAACACCGCAGGCGGTGCAGCGCAGCGCGGCGCAAACGCCGAAAGGGCGTCTGC
GTATCGATCCGGTCCAGAGCAATGGCACGAAGAGCACGCCATCAGTCAGCACCGGCGACAGCGGTGATGTGCTGAAGGGG
GAGCTGCTTGATGCGCTGCTTGAAGGCATGGGACTGAGCGACATGCAGCCGGTGCCGCAGTTCGATAAAGAAAACATGCG
CCAGTTCGGTCAGATGCTGAGCATGTTCTCGCAGGGCACGGTTGCGCTGTTGTCGTCGCGTTCTATTCTGAAACGCGGTG
TAAAAGCGGACATGACCATGGTGCTGGATGACGCCAACAACCCGTTCAAACTGCTGCCGTCGGGTAAAACCGTATTAATG
CAGATGTTCGGCACGCGTATGCCTGGTTTTATGCCGCCGAAAAAATCGGTGCGTGACGCACTGATCGATTTACAGGCGCA
CCAGCTGGGGATGATCTCCGGTATTCGCGCCATTATCGCCGCCATGTTGCAGCAGTTTAATCCGGAGCAACTGGAAGATG
ACGCCAAACGCGACGGCGCAACCGCGCGGCTTGGCGTGCTCTCCAACCGTAAAGCCGCGTTATGGGATTACTACGTTCGT
ACTTACGCCCAGACGGCCGGTGAGATTGACGATGACTTCCACACTCTGTTTGGCGAAGCGTTCCTCCACGCTTACGACAT
GGAAGTCAACCAGTACAAAGACTCACAAAGCGGATCGGAAGAATGA