Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01235  |
| T6SS type | Type i1 |
| Strain | Vibrio vulnificus 106-2A |
| Replicon (RefSeq) | chromosome (NZ_LMTD01000002) |
| Location | 158416..182116 |
| Function | anti-bacterial |
| Comment | Secretes Hcp-1 |
| References | [1] Church SR, Lux T, Baker-Austin C, Buddington SP, Michell SL. et al (2016) Vibrio vulnificus Type 6 Secretion System 1 Contains Anti-Bacterial Properties.. PLoS One. 11(10):e0165500. [PudMed:27798649] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TagH | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM | VasH | VasI |
| Number | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| VV1062A_RS01690 | 154326..154943 | + | 618 | 499393827 | ATP-dependent zinc protease | ||
| VV1062A_RS01695 | 155097..155633 | - | 537 | 1119685184 | hypothetical protein | ||
| VV1062A_RS01700 | 155778..156146 | - | 369 | 1119685183 | NirD/YgiW/YdeI family stress tolerance protein | ||
| VV1062A_RS01705 | 157072..157992 | + | 921 | 1119685241 | sel1 repeat family protein | ||
| T6CP015502 | TssB | VV1062A_RS01710 (tssB) | 158416..158922 | + | 507 | 1119685181 | type VI secretion system contractile sheath small subunit |
| T6CP015503 | TssC | VV1062A_RS01715 (tssC) | 158959..160434 | + | 1476 | 1119685179 | type VI secretion system contractile sheath large subunit |
| T6CP015504 | TssE | VV1062A_RS01720 (tssE) | 160437..160874 | + | 438 | 1119685178 | type VI secretion system baseplate subunit TssE |
| T6CP015505 | TssF | VV1062A_RS01725 (tssF) | 160880..162649 | + | 1770 | 1119685176 | type VI secretion system baseplate subunit TssF |
| T6CP015506 | TssG | VV1062A_RS01730 (tssG) | 162613..163629 | + | 1017 | 1119685174 | type VI secretion system baseplate subunit TssG |
| T6CP015507 | TagH | VV1062A_RS01735 (tagH) | 163632..165101 | + | 1470 | 1119685172 | type VI secretion system-associated FHA domain protein TagH |
| T6CP015508 | TssJ | VV1062A_RS01740 (tssJ) | 165104..165580 | + | 477 | 1119685239 | type VI secretion system lipoprotein TssJ |
| T6CP015509 | TssK | VV1062A_RS01745 (tssK) | 165587..166921 | + | 1335 | 782645131 | type VI secretion system baseplate subunit TssK |
| T6CP015510 | TssL | VV1062A_RS01750 | 166924..167697 | + | 774 | 1119685170 | type IVB secretion system protein IcmH/DotU |
| T6CP015511 | TssH | VV1062A_RS01755 (tssH) | 167723..170332 | + | 2610 | 1119685168 | type VI secretion system ATPase TssH |
| T6CP015512 | VasH | VV1062A_RS01760 | 170335..171936 | + | 1602 | 1119685167 | sigma-54-dependent Fis family transcriptional regulator |
| T6CP015513 | VasI | VV1062A_RS01765 (tagO) | 171906..172586 | + | 681 | 1337739952 | type VI secretion system-associated protein TagO |
| T6CP015514 | TssA | VV1062A_RS01770 (tssA) | 172596..173999 | + | 1404 | 1119685164 | type VI secretion system protein TssA |
| T6CP015515 | TssM | VV1062A_RS01775 (tssM) | 174060..177560 | + | 3501 | 1867138634 | type VI secretion system membrane subunit TssM |
| T6CP015516 | TssA | VV1062A_RS01780 | 177610..178872 | + | 1263 | 1119685160 | ImpA family type VI secretion system protein |
| T6CP015517 | TssD | VV1062A_RS01785 | 179429..179947 | + | 519 | 1119685158 | type VI secretion system effector Hcp-2 |
| T6CP015518 | TssI | VV1062A_RS01790 | 180053..182116 | + | 2064 | 1119685156 | type VI secretion system tip protein VgrG |
| VV1062A_RS01795 | 182119..183636 | + | 1518 | 1119685154 | PAAR domain-containing protein | ||
| VV1062A_RS01800 | 183715..184563 | + | 849 | 1173688666 | ankyrin repeat domain-containing protein | ||
| VV1062A_RS01805 | 184590..185552 | + | 963 | 1119685150 | DUF4123 domain-containing protein | ||
| VV1062A_RS01810 | 185549..186460 | + | 912 | 1119685148 | DUF4123 domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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