Detailed information of component protein


Summary

Component ID T6CP015505
Component protein type TssF
T6SS ID (Type) T6SS01235 experimental (Type i1)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (590 a.a.); Nucleotide sequence (1770 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS01725
Coordinate (Strand) 160880..162649 (+)
NCBI ID 1119685176
RefSeq NZ_LMTD01000002
Uniprot ID A0A2S3R386_VIBVL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2e-158 5..584
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-589 MTQDKYFREELAFLKEQGKEFTEIHPQLSRFLHGRTTDPDVERLLEGFAFLTARLREKVEDEFPELTHSVINMLWPNYLRPIPSMSVVAFEPDKSLSEKQTILRSTQLDSKPVFGTPCHFNTCRDVSVYPMHCQGVHAEHTREATTIQISLSMLGEMTVGDAKLDTLRFYLGGDKYSSQTLYLWLHHYLQKMTIEVQGVEFTLPSDAFSTVGFSSNQALLPYPKNVYDGYRILQEYLSFPEAFHFFDVKGLDKTLPKTVSGDFTLHIHFSKTLPADARVRQDNFQLYCTPVINLFEHDADPIDLTGRRSEYRVVPSSRYPSHYEVFSVDQVVGWQDTESEGKRIRGEKRVYSSFESFQHEVERVRHRQALYYRARVKESIRGDGFDSFISFVRGDETLSMGVDEAVSIKLTCTNRLLPLELGVGDICVATDTSPPYASFKNITVPSQSLRPVLDGSLLWTLISNLSLNYLSLLSKDALSSVLRAYDFRALVDRQAERVARMRLEGIVKIESKPVDKILRGLPVRGLQSTLYIDQAGFSSEGDLFLFGTVLSHFFALYASINSFHELVVVNISNQEKYSWGTQSGMQPLI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9917 - -


  Protein sequence: 590 a.a.    

>T6CP015505 NZ_LMTD01000002:160880-162649 [Vibrio vulnificus] [TssF]
MTQDKYFREELAFLKEQGKEFTEIHPQLSRFLHGRTTDPDVERLLEGFAFLTARLREKVEDEFPELTHSVINMLWPNYLR
PIPSMSVVAFEPDKSLSEKQTILRSTQLDSKPVFGTPCHFNTCRDVSVYPMHCQGVHAEHTREATTIQISLSMLGEMTVG
DAKLDTLRFYLGGDKYSSQTLYLWLHHYLQKMTIEVQGVEFTLPSDAFSTVGFSSNQALLPYPKNVYDGYRILQEYLSFP
EAFHFFDVKGLDKTLPKTVSGDFTLHIHFSKTLPADARVRQDNFQLYCTPVINLFEHDADPIDLTGRRSEYRVVPSSRYP
SHYEVFSVDQVVGWQDTESEGKRIRGEKRVYSSFESFQHEVERVRHRQALYYRARVKESIRGDGFDSFISFVRGDETLSM
GVDEAVSIKLTCTNRLLPLELGVGDICVATDTSPPYASFKNITVPSQSLRPVLDGSLLWTLISNLSLNYLSLLSKDALSS
VLRAYDFRALVDRQAERVARMRLEGIVKIESKPVDKILRGLPVRGLQSTLYIDQAGFSSEGDLFLFGTVLSHFFALYASI
NSFHELVVVNISNQEKYSWGTQSGMQPLI*

  Nucleotide sequence: 1770 bp    

>T6CP015505 NZ_LMTD01000002:160880-162649 [Vibrio vulnificus] [TssF]
ATGACACAAGACAAGTATTTCAGGGAGGAGCTTGCTTTTTTAAAAGAGCAAGGTAAAGAATTTACCGAAATTCATCCTCA
ACTCTCACGTTTCCTTCATGGTCGTACAACGGATCCTGATGTCGAGCGTTTATTGGAAGGTTTTGCCTTTTTGACAGCGC
GTCTACGTGAAAAAGTAGAGGACGAGTTCCCTGAGCTGACACACTCTGTTATTAACATGCTATGGCCAAATTATTTGCGC
CCCATTCCTAGTATGAGTGTAGTAGCTTTCGAACCTGATAAAAGTCTCAGTGAGAAGCAAACCATATTGCGCAGTACACA
ATTGGACAGTAAGCCAGTCTTTGGTACGCCATGCCATTTCAATACTTGCCGAGACGTATCTGTATACCCAATGCATTGCC
AAGGCGTTCATGCTGAACATACACGTGAGGCGACTACAATACAGATTTCACTCAGTATGTTGGGAGAAATGACCGTTGGA
GATGCTAAGTTAGATACCTTACGTTTCTATTTAGGTGGCGATAAATACAGTTCGCAAACGCTGTATCTTTGGTTGCATCA
TTATTTGCAGAAAATGACTATTGAAGTGCAAGGAGTGGAATTTACTCTACCTAGTGATGCGTTCTCTACGGTTGGCTTTT
CAAGTAATCAAGCATTATTGCCTTATCCGAAAAATGTTTATGATGGTTATCGTATCTTACAGGAGTATCTCTCATTTCCA
GAAGCATTCCATTTCTTTGATGTCAAAGGGTTAGACAAAACTCTACCCAAAACGGTTAGTGGTGATTTTACGTTGCATAT
CCATTTTTCTAAGACACTACCGGCTGATGCAAGAGTACGACAGGACAATTTTCAACTCTATTGTACACCAGTAATTAATT
TGTTTGAGCATGATGCTGACCCAATTGACTTAACCGGGCGGCGGTCTGAATATCGCGTGGTGCCATCCAGCCGATACCCC
TCACATTATGAAGTGTTTAGTGTTGATCAAGTCGTAGGTTGGCAAGATACAGAATCAGAAGGTAAGAGAATTCGAGGAGA
AAAACGAGTCTATTCGTCTTTTGAGAGTTTTCAACACGAAGTTGAACGAGTACGCCATCGCCAAGCGCTTTATTATCGGG
CAAGAGTGAAAGAAAGCATAAGAGGAGATGGCTTTGATTCATTTATCTCTTTTGTGCGAGGCGACGAAACTCTATCTATG
GGAGTGGACGAAGCTGTGTCGATTAAGCTTACCTGTACCAATCGTTTGTTGCCATTAGAGCTGGGGGTAGGTGATATCTG
CGTAGCAACAGATACATCTCCACCATATGCTTCCTTTAAAAATATTACCGTTCCGTCTCAGTCACTACGACCAGTATTAG
ATGGCAGTCTCTTATGGACTTTGATTTCCAACTTATCGCTTAACTACTTATCTTTACTTTCAAAAGATGCTCTAAGTAGT
GTTTTGAGAGCATACGATTTTCGTGCATTGGTCGATAGGCAAGCGGAACGGGTTGCACGTATGCGCCTTGAGGGTATCGT
TAAAATAGAATCTAAACCTGTAGATAAGATTCTGCGCGGTTTACCTGTACGAGGTTTACAGTCGACTCTTTACATAGATC
AAGCAGGATTCAGCTCTGAGGGAGACCTGTTTTTATTTGGTACGGTTTTGAGTCACTTCTTCGCACTGTACGCCAGCATC
AACTCATTCCACGAACTCGTCGTGGTTAATATTAGCAACCAAGAGAAGTACTCATGGGGAACACAGAGCGGAATGCAACC
GTTGATCTGA