Detailed information of component protein
Summary
| Component ID | T6CP015504 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01235  (Type i1) |
| Strain | Vibrio vulnificus 106-2A |
| Replicon | chromosome |
| Sequence | Protein sequence (146 a.a.); Nucleotide sequence (438 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VV1062A_RS01720 |
| Coordinate (Strand) | 160437..160874 (+) |
| NCBI ID | 1119685178 |
| RefSeq | NZ_LMTD01000002 |
| Uniprot ID | A0A2S3R3A0_VIBVL |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 7.8e-16 | 38..124 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-145 | MTYIAPEESAFGVGFFERLEANAKPVSLTHGPDTWDVLESIKRNVSNILNTRVGGAQSAPHLGLVDFNDATSETLDLSVRIKMAIQECLERYEPRLTCVLVRADQDNFNPLTLKFHITATINSEALHEKVQFSLLLDQNRKYRVF |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9868 | - | - |
Protein sequence: 146 a.a.
>T6CP015504 NZ_LMTD01000002:160437-160874 [Vibrio vulnificus] [TssE]
MTYIAPEESAFGVGFFERLEANAKPVSLTHGPDTWDVLESIKRNVSNILNTRVGGAQSAPHLGLVDFNDATSETLDLSVR
IKMAIQECLERYEPRLTCVLVRADQDNFNPLTLKFHITATINSEALHEKVQFSLLLDQNRKYRVF*
MTYIAPEESAFGVGFFERLEANAKPVSLTHGPDTWDVLESIKRNVSNILNTRVGGAQSAPHLGLVDFNDATSETLDLSVR
IKMAIQECLERYEPRLTCVLVRADQDNFNPLTLKFHITATINSEALHEKVQFSLLLDQNRKYRVF*
Nucleotide sequence: 438 bp
>T6CP015504 NZ_LMTD01000002:160437-160874 [Vibrio vulnificus] [TssE]
ATGACATATATCGCGCCTGAAGAGAGTGCATTTGGTGTTGGCTTCTTTGAACGTTTGGAGGCCAATGCCAAACCAGTATC
ACTAACTCACGGTCCAGATACGTGGGATGTGCTCGAATCCATTAAAAGAAATGTATCGAACATTCTAAATACTCGAGTTG
GTGGTGCTCAAAGTGCTCCACACCTTGGGTTGGTTGACTTTAACGATGCAACGTCAGAAACCTTAGATCTCTCTGTCAGG
ATAAAAATGGCGATCCAAGAGTGTCTAGAACGCTATGAACCTCGCCTGACATGTGTTCTTGTAAGAGCGGATCAAGACAA
CTTTAATCCGTTGACTTTAAAGTTCCATATTACTGCGACTATCAATAGTGAAGCGTTGCATGAGAAGGTTCAGTTCAGTT
TGCTGTTGGATCAAAACAGAAAATATCGAGTGTTTTAA
ATGACATATATCGCGCCTGAAGAGAGTGCATTTGGTGTTGGCTTCTTTGAACGTTTGGAGGCCAATGCCAAACCAGTATC
ACTAACTCACGGTCCAGATACGTGGGATGTGCTCGAATCCATTAAAAGAAATGTATCGAACATTCTAAATACTCGAGTTG
GTGGTGCTCAAAGTGCTCCACACCTTGGGTTGGTTGACTTTAACGATGCAACGTCAGAAACCTTAGATCTCTCTGTCAGG
ATAAAAATGGCGATCCAAGAGTGTCTAGAACGCTATGAACCTCGCCTGACATGTGTTCTTGTAAGAGCGGATCAAGACAA
CTTTAATCCGTTGACTTTAAAGTTCCATATTACTGCGACTATCAATAGTGAAGCGTTGCATGAGAAGGTTCAGTTCAGTT
TGCTGTTGGATCAAAACAGAAAATATCGAGTGTTTTAA