Detailed information of component protein
Summary
| Component ID | T6CP015506 |
| Component protein type | TssG |
| T6SS ID (Type) | T6SS01235  (Type i1) |
| Strain | Vibrio vulnificus 106-2A |
| Replicon | chromosome |
| Sequence | Protein sequence (339 a.a.); Nucleotide sequence (1017 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VV1062A_RS01730 |
| Coordinate (Strand) | 162613..163629 (+) |
| NCBI ID | 1119685174 |
| RefSeq | NZ_LMTD01000002 |
| Uniprot ID | UPI00092A25B2 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_TssG | PF06996.13 | 4.1e-87 | 28..324 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-338 | MGNTERNATVDLKPDSAPTSLLTLPSNVREYNFYQLVELLQKLARLNPESEEWERECRVVFSANPSLGFSPCDVMSLDARSEECWILLTNFFGLSGAQSPLPGFIVEQLVTEEPGGYKQPFLDFFNNRLINLVYRVWRKYRYYVRFQPGAQDLFSAQLFALVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPHVVAGIIAHCFDLSDVSIRQWVRRRVEIDRSQQFELGKRNAALGVDTVVGESVIDCSGKFVICIKQLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELTMDESEAPSFCLNSKQSIALGWTSFLGHDAARKHVLIQVRQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9917 | - | - |
Protein sequence: 339 a.a.
>T6CP015506 NZ_LMTD01000002:162613-163629 [Vibrio vulnificus] [TssG]
MGNTERNATVDLKPDSAPTSLLTLPSNVREYNFYQLVELLQKLARLNPESEEWERECRVVFSANPSLGFSPCDVMSLDAR
SEECWILLTNFFGLSGAQSPLPGFIVEQLVTEEPGGYKQPFLDFFNNRLINLVYRVWRKYRYYVRFQPGAQDLFSAQLFA
LVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPHVVAGIIAHCFDLSDVSIRQWVRRRVEIDRSQQFELGKRNAALGVD
TVVGESVIDCSGKFVICIKQLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELTMDESEAPSFCLNSKQSIALGWT
SFLGHDAARKHVLIQVRQ*
MGNTERNATVDLKPDSAPTSLLTLPSNVREYNFYQLVELLQKLARLNPESEEWERECRVVFSANPSLGFSPCDVMSLDAR
SEECWILLTNFFGLSGAQSPLPGFIVEQLVTEEPGGYKQPFLDFFNNRLINLVYRVWRKYRYYVRFQPGAQDLFSAQLFA
LVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPHVVAGIIAHCFDLSDVSIRQWVRRRVEIDRSQQFELGKRNAALGVD
TVVGESVIDCSGKFVICIKQLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELTMDESEAPSFCLNSKQSIALGWT
SFLGHDAARKHVLIQVRQ*
Nucleotide sequence: 1017 bp
>T6CP015506 NZ_LMTD01000002:162613-163629 [Vibrio vulnificus] [TssG]
ATGGGGAACACAGAGCGGAATGCAACCGTTGATCTGAAACCGGATTCAGCGCCAACTTCCCTGTTAACTTTGCCAAGTAA
TGTGCGTGAATACAACTTCTATCAGTTGGTTGAGCTGCTACAAAAATTGGCAAGATTAAACCCAGAATCTGAAGAATGGG
AGCGAGAATGCCGTGTTGTTTTTAGTGCCAATCCAAGTTTAGGTTTTTCACCTTGTGACGTCATGTCATTGGACGCACGA
AGTGAGGAATGTTGGATTTTGTTAACCAATTTTTTTGGACTATCCGGTGCTCAATCACCATTACCAGGTTTTATTGTTGA
ACAATTAGTAACAGAGGAGCCGGGTGGGTATAAACAGCCATTTCTCGATTTCTTTAATAACCGATTAATTAATCTAGTGT
ATCGGGTATGGCGAAAATATCGCTACTACGTGCGTTTCCAACCAGGTGCGCAAGATTTGTTTTCCGCTCAACTATTTGCT
TTGGTTGGGCTAGGTGATCCAGATCTAAGAGGTGAGACGCCTATAAATTGGTGCAAGATGTTGGCTTATGCTGGCACTTT
AGCGGGGCGTAGCCGTTCACCTCATGTTGTTGCCGGTATCATTGCTCATTGCTTTGATCTCTCAGATGTTTCTATTCGTC
AATGGGTTAGACGCCGAGTAGAGATCGATCGTAGCCAACAGTTTGAGCTGGGTAAAAGGAACGCTGCGTTAGGTGTTGAT
ACAGTTGTTGGTGAGTCAGTTATCGATTGCAGTGGAAAGTTTGTTATTTGTATCAAGCAACTATCTCGATCGCGTTTTGC
GGATTTTTTACCTTCAGGTAAAGAATATCAGCCTCTTTGTAAGCTAGTTGAGTTCATTTTGCGTGAACAGATGGCTTATG
ACTTAGAGCTGACGATGGACGAAAGTGAAGCTCCTTCATTTTGCCTAAATTCAAAGCAGAGCATTGCGCTCGGATGGACT
TCATTTCTTGGCCATGATGCAGCAAGAAAACACGTTTTAATTCAAGTAAGGCAATAA
ATGGGGAACACAGAGCGGAATGCAACCGTTGATCTGAAACCGGATTCAGCGCCAACTTCCCTGTTAACTTTGCCAAGTAA
TGTGCGTGAATACAACTTCTATCAGTTGGTTGAGCTGCTACAAAAATTGGCAAGATTAAACCCAGAATCTGAAGAATGGG
AGCGAGAATGCCGTGTTGTTTTTAGTGCCAATCCAAGTTTAGGTTTTTCACCTTGTGACGTCATGTCATTGGACGCACGA
AGTGAGGAATGTTGGATTTTGTTAACCAATTTTTTTGGACTATCCGGTGCTCAATCACCATTACCAGGTTTTATTGTTGA
ACAATTAGTAACAGAGGAGCCGGGTGGGTATAAACAGCCATTTCTCGATTTCTTTAATAACCGATTAATTAATCTAGTGT
ATCGGGTATGGCGAAAATATCGCTACTACGTGCGTTTCCAACCAGGTGCGCAAGATTTGTTTTCCGCTCAACTATTTGCT
TTGGTTGGGCTAGGTGATCCAGATCTAAGAGGTGAGACGCCTATAAATTGGTGCAAGATGTTGGCTTATGCTGGCACTTT
AGCGGGGCGTAGCCGTTCACCTCATGTTGTTGCCGGTATCATTGCTCATTGCTTTGATCTCTCAGATGTTTCTATTCGTC
AATGGGTTAGACGCCGAGTAGAGATCGATCGTAGCCAACAGTTTGAGCTGGGTAAAAGGAACGCTGCGTTAGGTGTTGAT
ACAGTTGTTGGTGAGTCAGTTATCGATTGCAGTGGAAAGTTTGTTATTTGTATCAAGCAACTATCTCGATCGCGTTTTGC
GGATTTTTTACCTTCAGGTAAAGAATATCAGCCTCTTTGTAAGCTAGTTGAGTTCATTTTGCGTGAACAGATGGCTTATG
ACTTAGAGCTGACGATGGACGAAAGTGAAGCTCCTTCATTTTGCCTAAATTCAAAGCAGAGCATTGCGCTCGGATGGACT
TCATTTCTTGGCCATGATGCAGCAAGAAAACACGTTTTAATTCAAGTAAGGCAATAA