Detailed information of component protein


Summary

Component ID T6CP015515
Component protein type TssM
T6SS ID (Type) T6SS01235 experimental (Type i1)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (1167 a.a.); Nucleotide sequence (3501 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS01775
Coordinate (Strand) 174060..177560 (+)
NCBI ID 1867138634
RefSeq NZ_LMTD01000002
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 9.6e-77 188..445
IcmF-related PF06761.14 3e-73 495..809
IcmF_C PF06744.14 1.9e-23 1039..1145
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-4 VVAA
Transmembrane helix 5-27 LPILLFTTFILLNVAIWWAGPWL
Outside 28-36 EFAGYKPLE
Transmembrane helix 37-59 SIVARVVASSLFTLSCLAIWGIW
Inside 60-437 QWRKLQTFRAEQKREDQLRQDPIKVYEERQEVELNQVMNNMKQNLNKHNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDESVLIDPDGELLTQGNRSEDNNGAMERRLWLHFVDWLDRTRSRRPLNGIVLALDVSHLATATASERKAYASLLRARLRELMETLSTRLPVYIALTKLDLLHGFDPFFKHYTKSQREEVLGFTFSMDSLDNLDSWLDEFAEEYAQFVERMNRMLPHAVAMPMTLEERNAIYSFTRQLFGLKDILQQFFKEALESDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYSLSHAINTAQRAKNSTVYFTQKLFTHIIYPEAGLASDNFRVARNKRR
Transmembrane helix 438-457 LIGLSFIACTIATLLLAGTW
Outside 458-1166 HRSYINNVQHADAVLEKVNQYKEQFSSNRNLASQKDVLEPLNKIREATLEFGFFRDKPKYVSDFGLYQGHTIGPKVEETYLNLLENRFLPLLMADVVVALNQAQSDEEKLAVLRVYRMLVDKSGRYQDYVMDYFAKYWQMSFSGQRKTQEELLGHLDYAMRHTDLTADRLNDDKGAEKVMRPYDKVIAKAQVELSSMPNDQRVYRNLKLSAQTVLGPPVNLRSLIGPVFDVVFEERVLNSKNLYIPQMLTKRGFDDYFMPQSESVSELALIDSWVLGQSKTAQFSEADKQALRDKIRDLYVADYTNTWRSALNEIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLEDNTQLYSALPKDEAAIKELLKNPKYKVASMIETPFAELNSMLQSADSKPAYMTEVLASVDELKSYLKSIQDAPDVGMAALDATKARVKLVNADPIYTLKRVSSGLPKPLDTMMTKIADESWYVVKQEAIKHLEVRWAEDVYDTFQSKLAGRYPFNSASNKDVSLEDFETFFAPNGTLDNFYNHQLKMFIEENITVSADDSTQSIVRKEVLEQIEQAQKIREAFFNRKGILDVSFSVEPLSLSNNKRRSVLNVDGQFLAYSHGQRENVELIWPNTLRDSAVSKVTLVPTQSNMSPRSIQIQGPWAFFRLLDEGDVVAASQTSVDFKFIVDGGEMIYRINSEADANPFTERLFKSFKLSKTLY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9973 - -


  Protein sequence: 1167 a.a.    

>T6CP015515 NZ_LMTD01000002:174060-177560 [Vibrio vulnificus] [TssM]
VVAALPILLFTTFILLNVAIWWAGPWLEFAGYKPLESIVARVVASSLFTLSCLAIWGIWQWRKLQTFRAEQKREDQLRQD
PIKVYEERQEVELNQVMNNMKQNLNKHNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWI
GDESVLIDPDGELLTQGNRSEDNNGAMERRLWLHFVDWLDRTRSRRPLNGIVLALDVSHLATATASERKAYASLLRARLR
ELMETLSTRLPVYIALTKLDLLHGFDPFFKHYTKSQREEVLGFTFSMDSLDNLDSWLDEFAEEYAQFVERMNRMLPHAVA
MPMTLEERNAIYSFTRQLFGLKDILQQFFKEALESDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYSLSHAINTAQ
RAKNSTVYFTQKLFTHIIYPEAGLASDNFRVARNKRRLIGLSFIACTIATLLLAGTWHRSYINNVQHADAVLEKVNQYKE
QFSSNRNLASQKDVLEPLNKIREATLEFGFFRDKPKYVSDFGLYQGHTIGPKVEETYLNLLENRFLPLLMADVVVALNQA
QSDEEKLAVLRVYRMLVDKSGRYQDYVMDYFAKYWQMSFSGQRKTQEELLGHLDYAMRHTDLTADRLNDDKGAEKVMRPY
DKVIAKAQVELSSMPNDQRVYRNLKLSAQTVLGPPVNLRSLIGPVFDVVFEERVLNSKNLYIPQMLTKRGFDDYFMPQSE
SVSELALIDSWVLGQSKTAQFSEADKQALRDKIRDLYVADYTNTWRSALNEIDVKYFNDINDAVMVLENITSNLEPMQRL
LRTLEDNTQLYSALPKDEAAIKELLKNPKYKVASMIETPFAELNSMLQSADSKPAYMTEVLASVDELKSYLKSIQDAPDV
GMAALDATKARVKLVNADPIYTLKRVSSGLPKPLDTMMTKIADESWYVVKQEAIKHLEVRWAEDVYDTFQSKLAGRYPFN
SASNKDVSLEDFETFFAPNGTLDNFYNHQLKMFIEENITVSADDSTQSIVRKEVLEQIEQAQKIREAFFNRKGILDVSFS
VEPLSLSNNKRRSVLNVDGQFLAYSHGQRENVELIWPNTLRDSAVSKVTLVPTQSNMSPRSIQIQGPWAFFRLLDEGDVV
AASQTSVDFKFIVDGGEMIYRINSEADANPFTERLFKSFKLSKTLY*

  Nucleotide sequence: 3501 bp    

>T6CP015515 NZ_LMTD01000002:174060-177560 [Vibrio vulnificus] [TssM]
GTGGTCGCTGCATTACCAATTTTGCTATTCACTACGTTCATATTGTTGAACGTCGCCATTTGGTGGGCAGGCCCCTGGTT
AGAATTCGCCGGTTATAAACCTTTGGAGTCTATTGTGGCTCGAGTTGTGGCGAGTAGCTTATTTACTCTCAGTTGTCTAG
CCATTTGGGGCATTTGGCAATGGCGAAAACTGCAAACTTTTCGAGCGGAACAAAAACGTGAAGACCAGTTACGTCAAGAC
CCGATAAAAGTGTATGAAGAAAGACAAGAAGTTGAGTTGAATCAGGTCATGAACAACATGAAGCAGAACCTGAACAAACA
CAACTACTTATACGCGTTACCATGGTACTTAGTATTGGGGTTAGAAAACGCAGGAAAAACCAGCTTAATCAACCGTTCAG
GACAAAATTTTGTTTTTTCTTCAGTAATGCGAGCGTCGGGTCAAAAAAGTGAAAATCCGTATTCATTTGATTGGTGGATT
GGTGACGAATCTGTGTTAATTGACCCTGATGGTGAGTTATTAACCCAAGGTAATCGAAGTGAAGACAACAACGGGGCAAT
GGAACGTCGTTTATGGTTACATTTTGTAGATTGGCTTGACCGTACGCGGAGTAGGCGTCCCCTTAATGGAATAGTACTAG
CTCTCGATGTTTCCCACCTTGCAACGGCTACGGCATCCGAGCGTAAAGCTTATGCTAGTTTACTGCGTGCTCGTTTACGA
GAACTGATGGAGACACTATCGACTCGTTTACCAGTCTATATTGCTCTAACTAAACTCGATCTTCTTCATGGTTTTGACCC
CTTCTTTAAGCACTACACTAAAAGTCAGAGAGAAGAGGTGTTAGGTTTCACATTCTCAATGGATTCGTTAGATAACCTTG
ATTCATGGTTAGATGAATTTGCAGAGGAATATGCACAATTTGTTGAACGGATGAATCGAATGCTACCACATGCAGTAGCA
ATGCCGATGACGTTGGAAGAGCGAAACGCGATTTATAGTTTTACTCGGCAGCTATTTGGCCTAAAAGATATTCTTCAGCA
GTTTTTCAAAGAAGCGTTGGAGAGTGATCAGTTTTCTACTTCTGCCTTGGTGAGGGGAGCGTACTTTACTTCTGTTTATC
AGCAAGGCGTTCCTACAAATGCCTTTGATGATGCAGCTTCACGTCGTTATAGTCTCTCACACGCGATTAATACTGCGCAG
AGAGCGAAAAACTCAACCGTCTATTTCACACAGAAATTGTTTACGCACATAATTTATCCAGAAGCAGGTTTGGCTTCGGA
TAACTTTCGTGTTGCAAGAAATAAACGTCGTTTAATTGGACTTTCCTTCATTGCATGTACAATTGCAACATTACTTTTGG
CGGGAACTTGGCATCGTAGTTATATTAACAATGTGCAACATGCCGATGCAGTATTAGAAAAAGTAAACCAGTATAAAGAG
CAGTTTTCGAGCAATCGCAATCTTGCCTCTCAGAAAGACGTACTAGAACCGCTGAATAAGATTCGTGAAGCGACTCTAGA
ATTTGGTTTCTTTAGAGATAAGCCGAAATATGTTTCAGATTTTGGTCTTTACCAAGGGCATACCATTGGCCCTAAAGTTG
AAGAAACCTACCTCAATTTACTTGAAAACCGTTTTTTGCCCTTACTCATGGCCGATGTGGTAGTGGCTTTAAATCAAGCG
CAGAGTGATGAGGAGAAGCTTGCGGTCCTTCGTGTCTATCGAATGTTGGTAGATAAAAGTGGTCGATACCAAGATTACGT
GATGGATTATTTCGCTAAGTATTGGCAGATGTCTTTTTCGGGTCAACGCAAAACTCAAGAGGAATTACTAGGGCACTTGG
ATTATGCGATGCGTCATACCGATTTAACCGCAGATCGTCTAAACGATGATAAAGGGGCTGAAAAGGTTATGCGTCCATAC
GATAAAGTGATCGCGAAAGCCCAGGTTGAGTTGAGTTCAATGCCAAACGATCAGCGTGTCTACAGAAACCTTAAGCTGAG
TGCGCAAACGGTTCTAGGTCCTCCAGTGAATCTTAGAAGCTTGATTGGTCCGGTTTTTGATGTCGTTTTTGAAGAACGGG
TACTGAATAGCAAGAATTTGTATATTCCTCAAATGTTAACCAAACGTGGGTTTGATGACTATTTTATGCCGCAGTCTGAA
TCAGTTTCCGAGTTGGCTTTGATTGATAGCTGGGTATTGGGTCAAAGTAAAACGGCACAATTTAGTGAAGCTGACAAACA
GGCACTGCGCGACAAAATACGAGATCTCTACGTCGCTGATTATACAAACACATGGCGCTCAGCACTGAACGAGATAGATG
TTAAGTATTTTAATGATATCAATGATGCAGTTATGGTGTTAGAGAACATCACGAGTAATCTCGAACCAATGCAACGCTTA
CTTCGTACTCTAGAGGATAATACGCAACTGTATAGCGCGTTACCTAAAGACGAAGCTGCAATCAAAGAATTGCTGAAAAA
TCCAAAGTACAAAGTGGCTTCTATGATAGAAACACCATTTGCTGAACTTAACAGTATGCTCCAGTCTGCTGACAGTAAGC
CAGCATACATGACAGAAGTGCTCGCATCGGTTGATGAGTTAAAGAGTTATCTAAAATCGATCCAAGATGCGCCGGATGTT
GGCATGGCTGCATTAGATGCGACCAAAGCGCGAGTAAAACTAGTCAACGCGGATCCTATTTATACATTAAAGCGCGTCTC
ATCTGGGTTACCTAAACCACTGGATACAATGATGACGAAAATTGCAGATGAGAGCTGGTATGTTGTTAAACAAGAAGCGA
TCAAGCATCTTGAAGTGCGCTGGGCTGAAGACGTTTATGACACGTTCCAAAGTAAATTAGCAGGACGTTATCCATTTAAT
TCTGCTTCCAATAAAGATGTTTCCTTGGAAGATTTTGAAACTTTCTTTGCGCCTAATGGTACGCTGGATAACTTTTATAA
TCATCAGTTAAAGATGTTTATTGAAGAGAATATAACTGTTTCAGCAGATGACTCTACGCAATCAATTGTCCGTAAAGAGG
TACTAGAGCAGATTGAACAAGCACAAAAAATTCGAGAAGCATTCTTTAATCGTAAAGGTATCTTAGATGTTAGTTTCTCC
GTCGAACCGCTTAGTCTGAGTAACAACAAACGGCGGAGTGTATTGAATGTCGACGGTCAGTTTTTGGCTTATAGCCATGG
ACAGCGTGAAAATGTTGAATTGATTTGGCCAAATACTCTACGTGATTCCGCTGTTTCTAAAGTCACGTTGGTACCGACTC
AAAGCAACATGTCGCCACGCAGTATACAGATACAAGGGCCTTGGGCATTCTTTCGATTGTTAGATGAAGGAGATGTGGTT
GCGGCTAGTCAGACGTCAGTAGATTTTAAGTTCATAGTTGATGGTGGTGAAATGATCTACAGAATTAACTCAGAAGCGGA
TGCAAATCCTTTTACTGAACGTCTTTTCAAGTCATTCAAACTGTCTAAAACTCTTTATTAA