Detailed information of component protein


Summary

Component ID T6CP015512
Component protein type VasH
T6SS ID (Type) T6SS01235 experimental (Type i1)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (534 a.a.); Nucleotide sequence (1602 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS01760
Coordinate (Strand) 170335..171936 (+)
NCBI ID 1119685167
RefSeq NZ_LMTD01000002
Uniprot ID UPI0009294EF0
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Sigma54_activat PF00158.28 2.9e-67 193..359
HTH_8 PF02954.21 2.2e-07 488..524
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-533 MSNWLTFATELVGIRKPHQLALQFADLLVQGLDLSDSLLLFPSSDGRLLVPHDPLREFAWSVTDFDVPFSHVLQSSKAMHLTADELVFWQTNRTFRQFTDKVGMFDSVWIQPLPMRNPQVNSLLLLIGETDGIVKAFSDSDFLRFVEVFSQQWALLNEMQREEQNHRELKQSLTDIERDSVQRSLANVLSQTLIGDSTVMQKLRDQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADTDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGSKRELSSDFRLVSATHVNVLEQVRKKAFRQDLYYRLFQYPITLPPLAARLDDIELLGEHFVRAFNVKHKRSIRGLNYRAIDSLKRYRFPGNVRELKHLVEFGCAQTLDDSEVEANCFIHRLNVEESACETMSTYDSSSMAPIYHDHETDSSAILNGEPNFAVIHDLKQAVSQFEAQIITERLTRFSGDRAKAAESLGIPKRTLAYKCLKLEIKAP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9901 - -


  Protein sequence: 534 a.a.    

>T6CP015512 NZ_LMTD01000002:170335-171936 [Vibrio vulnificus] [VasH]
MSNWLTFATELVGIRKPHQLALQFADLLVQGLDLSDSLLLFPSSDGRLLVPHDPLREFAWSVTDFDVPFSHVLQSSKAMH
LTADELVFWQTNRTFRQFTDKVGMFDSVWIQPLPMRNPQVNSLLLLIGETDGIVKAFSDSDFLRFVEVFSQQWALLNEMQ
REEQNHRELKQSLTDIERDSVQRSLANVLSQTLIGDSTVMQKLRDQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSR
KSAPFVAINCAAIPEHLLESELFGYCKGAFSGADTDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGSK
RELSSDFRLVSATHVNVLEQVRKKAFRQDLYYRLFQYPITLPPLAARLDDIELLGEHFVRAFNVKHKRSIRGLNYRAIDS
LKRYRFPGNVRELKHLVEFGCAQTLDDSEVEANCFIHRLNVEESACETMSTYDSSSMAPIYHDHETDSSAILNGEPNFAV
IHDLKQAVSQFEAQIITERLTRFSGDRAKAAESLGIPKRTLAYKCLKLEIKAP*

  Nucleotide sequence: 1602 bp    

>T6CP015512 NZ_LMTD01000002:170335-171936 [Vibrio vulnificus] [VasH]
ATGAGCAATTGGCTGACGTTTGCAACCGAATTGGTGGGAATAAGAAAACCACACCAACTTGCTCTTCAGTTTGCGGATCT
GTTGGTCCAAGGTTTAGATCTGAGCGATAGCCTTTTATTGTTTCCTTCATCAGATGGGCGTTTACTTGTTCCTCATGATC
CACTACGTGAGTTTGCTTGGTCGGTAACCGATTTTGATGTGCCATTTAGCCATGTATTACAGTCATCGAAAGCTATGCAT
TTAACAGCGGACGAACTGGTTTTTTGGCAAACTAATCGGACTTTTCGTCAATTTACCGACAAGGTAGGGATGTTTGATTC
TGTTTGGATTCAACCGTTACCCATGCGTAACCCTCAGGTTAACTCTTTGTTACTTTTGATAGGGGAGACAGATGGTATCG
TAAAAGCTTTTTCGGATTCAGACTTTCTTCGATTTGTAGAGGTTTTCTCCCAACAATGGGCGTTGCTCAATGAAATGCAA
CGCGAAGAGCAAAATCATCGAGAACTAAAGCAATCGCTGACAGACATTGAACGCGACTCTGTTCAACGTTCGCTAGCGAA
TGTCTTATCTCAAACTTTAATTGGTGATAGTACCGTGATGCAAAAACTGCGTGATCAGATTGTGTCTGCCGCGAACTCTC
AATTGTCGGTAATGGTTCAAGGAGAAACAGGAACTGGCAAAGAATTAGTAGCAGCAGCAGTTCACGAGCTCTCATCTCGT
AAATCTGCCCCTTTTGTTGCGATTAACTGTGCCGCTATTCCAGAGCATCTTCTAGAAAGTGAATTGTTTGGTTATTGCAA
AGGAGCATTTTCTGGGGCTGATACGGACAAGCAAGGTCTGATTGCGCAAGCGAATGGGGGCACATTATTTTTGGATGAAA
TTGGTGATATGCCATTGACTCTGCAAGCAAAGTTACTTCGCGTATTGGAATCGCGAACCTTTCGCCCCTTAGGAAGTAAG
CGAGAACTCAGTTCCGATTTTCGTCTCGTTTCGGCAACCCATGTGAACGTTTTAGAGCAAGTTCGGAAAAAAGCATTTCG
TCAAGATTTGTATTACAGATTGTTCCAGTATCCGATTACTTTACCCCCATTAGCGGCAAGGTTAGATGATATTGAATTAC
TCGGTGAACATTTTGTACGAGCATTTAATGTAAAACATAAGAGAAGTATTCGAGGTTTGAACTATCGGGCTATCGACAGC
CTAAAACGATACAGATTTCCCGGCAATGTGCGTGAGCTAAAACATTTAGTGGAATTTGGCTGCGCACAGACGCTCGATGA
CTCTGAGGTGGAAGCTAACTGCTTTATACATCGTTTGAATGTCGAAGAAAGCGCTTGTGAGACTATGTCTACTTATGATT
CTTCGTCCATGGCCCCCATTTACCATGATCATGAAACAGATTCATCTGCCATTTTAAATGGTGAGCCAAATTTTGCGGTG
ATTCATGATTTAAAACAAGCGGTAAGCCAGTTTGAAGCTCAAATTATCACTGAGCGATTAACTCGTTTTTCTGGGGATCG
AGCCAAGGCCGCCGAGAGCTTAGGTATTCCCAAGCGTACATTGGCCTATAAATGCCTGAAATTGGAGATCAAAGCTCCAT
GA