Detailed information of component protein


Summary

Component ID T6CP015502
Component protein type TssB
T6SS ID (Type) T6SS01235 experimental (Type i1)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (169 a.a.); Nucleotide sequence (507 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) VV1062A_RS01710
Coordinate (Strand) 158416..158922 (+)
NCBI ID WP_072604021.1
RefSeq NZ_LMTD01000002
Uniprot ID A0A2S3R396_VIBVL
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 7.4e-55 6..157

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-168 MSKEGSVAPKERINIKYIPATGDAQAEIELPLKTLVVGDFKGHSEDIPLEERSTVAVDKNNFEAVMRESELKISTTVKNKLIDEEDAELPVELSFNSLADFSPDSVASQVPELKKLIELREALVALKGPLGNIPAFRERLQSLINSEESRDKLLAELNLLSGREEPTA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9905 - -



  Protein sequence: 169 a.a.    

>T6CP015502 NZ_LMTD01000002:158416-158922 [Vibrio vulnificus] [TssB]
MSKEGSVAPKERINIKYIPATGDAQAEIELPLKTLVVGDFKGHSEDIPLEERSTVAVDKNNFEAVMRESELKISTTVKNK
LIDEEDAELPVELSFNSLADFSPDSVASQVPELKKLIELREALVALKGPLGNIPAFRERLQSLINSEESRDKLLAELNLL
SGREEPTA*

  Nucleotide sequence: 507 bp    

>T6CP015502 NZ_LMTD01000002:158416-158922 [Vibrio vulnificus] [TssB]
ATGTCTAAAGAAGGAAGTGTGGCTCCCAAGGAGCGAATTAATATTAAATATATCCCTGCGACGGGAGACGCACAGGCAGA
GATTGAGTTGCCGCTCAAAACGCTTGTTGTTGGTGATTTCAAGGGGCATTCAGAGGATATTCCTTTGGAAGAGCGTTCAA
CAGTAGCAGTAGATAAAAATAACTTTGAAGCTGTAATGCGTGAGAGTGAGCTAAAAATTAGTACAACTGTGAAAAACAAG
CTAATTGATGAAGAGGATGCAGAGCTTCCTGTTGAACTAAGTTTCAACTCATTAGCTGATTTTTCGCCTGATTCAGTCGC
ATCGCAAGTTCCTGAACTGAAAAAATTAATTGAATTGCGTGAAGCCCTAGTCGCTCTAAAAGGACCTCTGGGTAATATTC
CTGCATTTCGAGAGCGCTTACAGTCTTTAATCAATTCCGAAGAATCGAGAGATAAACTACTGGCAGAGTTAAATCTGCTT
AGTGGTCGAGAAGAGCCAACAGCTTAA