Detailed information of component protein
Summary
| Component ID | T6CP015502 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01235  (Type i1) |
| Strain | Vibrio vulnificus 106-2A |
| Replicon | chromosome |
| Sequence | Protein sequence (169 a.a.); Nucleotide sequence (507 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VV1062A_RS01710 |
| Coordinate (Strand) | 158416..158922 (+) |
| NCBI ID | WP_072604021.1 |
| RefSeq | NZ_LMTD01000002 |
| Uniprot ID | A0A2S3R396_VIBVL |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 7.4e-55 | 6..157 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-168 | MSKEGSVAPKERINIKYIPATGDAQAEIELPLKTLVVGDFKGHSEDIPLEERSTVAVDKNNFEAVMRESELKISTTVKNKLIDEEDAELPVELSFNSLADFSPDSVASQVPELKKLIELREALVALKGPLGNIPAFRERLQSLINSEESRDKLLAELNLLSGREEPTA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9905 | - | - |
Protein sequence: 169 a.a.
>T6CP015502 NZ_LMTD01000002:158416-158922 [Vibrio vulnificus] [TssB]
MSKEGSVAPKERINIKYIPATGDAQAEIELPLKTLVVGDFKGHSEDIPLEERSTVAVDKNNFEAVMRESELKISTTVKNK
LIDEEDAELPVELSFNSLADFSPDSVASQVPELKKLIELREALVALKGPLGNIPAFRERLQSLINSEESRDKLLAELNLL
SGREEPTA*
MSKEGSVAPKERINIKYIPATGDAQAEIELPLKTLVVGDFKGHSEDIPLEERSTVAVDKNNFEAVMRESELKISTTVKNK
LIDEEDAELPVELSFNSLADFSPDSVASQVPELKKLIELREALVALKGPLGNIPAFRERLQSLINSEESRDKLLAELNLL
SGREEPTA*
Nucleotide sequence: 507 bp
>T6CP015502 NZ_LMTD01000002:158416-158922 [Vibrio vulnificus] [TssB]
ATGTCTAAAGAAGGAAGTGTGGCTCCCAAGGAGCGAATTAATATTAAATATATCCCTGCGACGGGAGACGCACAGGCAGA
GATTGAGTTGCCGCTCAAAACGCTTGTTGTTGGTGATTTCAAGGGGCATTCAGAGGATATTCCTTTGGAAGAGCGTTCAA
CAGTAGCAGTAGATAAAAATAACTTTGAAGCTGTAATGCGTGAGAGTGAGCTAAAAATTAGTACAACTGTGAAAAACAAG
CTAATTGATGAAGAGGATGCAGAGCTTCCTGTTGAACTAAGTTTCAACTCATTAGCTGATTTTTCGCCTGATTCAGTCGC
ATCGCAAGTTCCTGAACTGAAAAAATTAATTGAATTGCGTGAAGCCCTAGTCGCTCTAAAAGGACCTCTGGGTAATATTC
CTGCATTTCGAGAGCGCTTACAGTCTTTAATCAATTCCGAAGAATCGAGAGATAAACTACTGGCAGAGTTAAATCTGCTT
AGTGGTCGAGAAGAGCCAACAGCTTAA
ATGTCTAAAGAAGGAAGTGTGGCTCCCAAGGAGCGAATTAATATTAAATATATCCCTGCGACGGGAGACGCACAGGCAGA
GATTGAGTTGCCGCTCAAAACGCTTGTTGTTGGTGATTTCAAGGGGCATTCAGAGGATATTCCTTTGGAAGAGCGTTCAA
CAGTAGCAGTAGATAAAAATAACTTTGAAGCTGTAATGCGTGAGAGTGAGCTAAAAATTAGTACAACTGTGAAAAACAAG
CTAATTGATGAAGAGGATGCAGAGCTTCCTGTTGAACTAAGTTTCAACTCATTAGCTGATTTTTCGCCTGATTCAGTCGC
ATCGCAAGTTCCTGAACTGAAAAAATTAATTGAATTGCGTGAAGCCCTAGTCGCTCTAAAAGGACCTCTGGGTAATATTC
CTGCATTTCGAGAGCGCTTACAGTCTTTAATCAATTCCGAAGAATCGAGAGATAAACTACTGGCAGAGTTAAATCTGCTT
AGTGGTCGAGAAGAGCCAACAGCTTAA