Detailed information of component protein


Summary

Component ID T6CP015503
Component protein type TssC
T6SS ID (Type) T6SS01235 experimental (Type i1)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (492 a.a.); Nucleotide sequence (1476 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS01715
Coordinate (Strand) 158959..160434 (+)
NCBI ID 1119685179
RefSeq NZ_LMTD01000002
Uniprot ID UPI0009328238
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.7e-126 65..364
VipB_2 PF18945.2 1.8e-45 377..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-491 MSTTETVQERPQLLQGGLLDEIMAQTRIAPSEEGYDIAKKGVAAFIENLIDSKHSADPVNKSLVDQMLVELDKKISSQMDEILHDSKFQAMESSWRGLKLFVDRTDFRENNKVEIIHVTKEELLEDFEFAPETSQSGLYKHVYSAGYGQFGGEPVGAMIGNYVFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNVKDLKSTFESPKYTKWRSIRESEDARYIGLTAPRFLLRVPYDPTENPVKSFNYEEGVSASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGALQSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNATFFSANSIQKPKIFPNTKEGKEAETNYKLGTQLPYMMIINRLAHYVKVLQREQIGAWKERQDLERELNSWIKQYVADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANFELSLVGRLDQA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9913 - -


  Protein sequence: 492 a.a.    

>T6CP015503 NZ_LMTD01000002:158959-160434 [Vibrio vulnificus] [TssC]
MSTTETVQERPQLLQGGLLDEIMAQTRIAPSEEGYDIAKKGVAAFIENLIDSKHSADPVNKSLVDQMLVELDKKISSQMD
EILHDSKFQAMESSWRGLKLFVDRTDFRENNKVEIIHVTKEELLEDFEFAPETSQSGLYKHVYSAGYGQFGGEPVGAMIG
NYVFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNVKDLKSTFESPKYTKWRSIRESEDARYIGLTAP
RFLLRVPYDPTENPVKSFNYEEGVSASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGAL
QSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNATFFSANSIQKPKIFPNTKEGKEAETNYKLGTQLPYMMIINRLAHY
VKVLQREQIGAWKERQDLERELNSWIKQYVADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANF
ELSLVGRLDQA*

  Nucleotide sequence: 1476 bp    

>T6CP015503 NZ_LMTD01000002:158959-160434 [Vibrio vulnificus] [TssC]
ATGTCTACTACAGAAACAGTCCAGGAAAGGCCGCAGCTTCTTCAAGGTGGTCTTCTCGATGAAATTATGGCGCAAACTCG
TATTGCACCTAGTGAAGAAGGCTATGATATTGCCAAAAAAGGCGTCGCAGCGTTTATAGAAAATTTAATTGATTCAAAAC
ACTCGGCAGATCCAGTCAATAAGTCTCTCGTAGATCAAATGTTGGTTGAGTTGGATAAGAAAATCAGTTCTCAGATGGAC
GAAATTCTTCACGATTCTAAATTTCAAGCAATGGAGTCATCATGGAGAGGCTTAAAGCTGTTTGTTGATCGTACAGATTT
CCGTGAAAACAACAAAGTCGAAATTATCCATGTCACAAAAGAAGAGTTATTAGAAGATTTTGAATTTGCGCCAGAAACTT
CACAGTCTGGTCTATACAAACACGTCTATTCTGCTGGTTATGGTCAGTTCGGGGGGGAACCAGTTGGAGCCATGATTGGT
AATTATGTATTCACACCATCTACCCCAGATATGAAGTTACTGCAATATATGGGAGCGTTGGGAGCAATGGCCCATGCTCC
ATTTATTTCCAGTGTGGGTCCAGAGTTTTTCGGTATCGATTCTTTTGAAGAGTTGCCTAACGTTAAGGACCTAAAATCGA
CGTTTGAGAGCCCTAAATACACAAAGTGGCGTTCAATTCGTGAATCTGAGGATGCTCGATATATTGGTTTAACTGCTCCT
AGATTCTTGCTGCGTGTTCCTTACGATCCGACAGAAAATCCTGTAAAATCATTTAATTATGAAGAGGGCGTGAGTGCGTC
TCATGAACATTATTTGTGGGGAAATACTGCTTTTGCATTTGCCACACGCCTTACTGATAGTTTCGCTAAATACCGTTGGT
GTCCGAATATTATTGGTCCTCAAAGTGGTGGAGCAGTTGAAGATTTACCTGTCCACGTTTTTGAATCGATGGGAGCCTTG
CAAAGTAAAATTCCTACGGAAGTGTTAATAACAGATCGTAAAGAGTTTGAATTGGCAGAAGAAGGGTTTATTGCACTAAC
AATGAGAAAAGGTAGTGATAACGCGACCTTTTTCTCTGCTAACTCAATTCAGAAGCCAAAGATTTTCCCAAATACCAAAG
AAGGTAAAGAAGCGGAAACTAACTATAAGTTAGGTACACAACTCCCTTATATGATGATTATCAACCGTTTGGCACATTAC
GTAAAAGTTTTGCAACGTGAACAGATTGGAGCTTGGAAAGAGCGTCAAGATCTCGAGCGTGAGCTGAATTCATGGATTAA
ACAGTATGTTGCCGATCAAGAAAATCCACCAGCAGATGTTCGTAGTCGCCGTCCTCTACGTGCAGCACGTATTGAAGTGA
TGGATGTCGAAGGAAATCCAGGTTGGTATCAGGTATCGCTATCAGTTCGTCCACATTTCAAGTATATGGGAGCGAATTTT
GAGCTGTCTTTGGTTGGACGTCTTGACCAAGCTTGA