Detailed information of component protein


Summary

Component ID T6CP015516
Component protein type TssA
T6SS ID (Type) T6SS01235 experimental (Type i1)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (421 a.a.); Nucleotide sequence (1263 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS01780
Coordinate (Strand) 177610..178872 (+)
NCBI ID 1119685160
RefSeq NZ_LMTD01000002
Uniprot ID A0A2S3R397_VIBVL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.2e-06 26..99
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-200 MSNVIFIDNLCYRLTSDSQEIRGLEPYFKIREEINRRFNPIVGGTDWQCVKEQCELLAFHQGMDFLVCGYYAVACLKTQGLSGYAKGMELMSASLANQGECDVKSAKIRKEILDWVNARVVHELKTLKPNYESLRELYRAERYCERLHQLFEYQQTEYKVDFEGVGFALFEHIDRIETHYHSLLKKQEKNQLPELKLWQR
Transmembrane helix 201-223 HYGLAMLGGLGIVIGLIGGYWVW
Inside 224-420 PWLHTTPYAAPQIVTTLNDETKSHSLIAESSQAERLRWQNTLIPLYRSTLEQNLSAPFNASKQQANSHLILLKKLYPKDERVTTLSQEFSQKQQIALEQTEMFVSKFSEIRTKMANIALLAKKGRWKELEKQTKSLEDFAVSLSPIYGRVDYVQGLIRQGDISSAEKELSILQQRLDSLSWKIVELELSIRNKSKQQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9848 - -


  Protein sequence: 421 a.a.    

>T6CP015516 NZ_LMTD01000002:177610-178872 [Vibrio vulnificus] [TssA]
MSNVIFIDNLCYRLTSDSQEIRGLEPYFKIREEINRRFNPIVGGTDWQCVKEQCELLAFHQGMDFLVCGYYAVACLKTQG
LSGYAKGMELMSASLANQGECDVKSAKIRKEILDWVNARVVHELKTLKPNYESLRELYRAERYCERLHQLFEYQQTEYKV
DFEGVGFALFEHIDRIETHYHSLLKKQEKNQLPELKLWQRHYGLAMLGGLGIVIGLIGGYWVWPWLHTTPYAAPQIVTTL
NDETKSHSLIAESSQAERLRWQNTLIPLYRSTLEQNLSAPFNASKQQANSHLILLKKLYPKDERVTTLSQEFSQKQQIAL
EQTEMFVSKFSEIRTKMANIALLAKKGRWKELEKQTKSLEDFAVSLSPIYGRVDYVQGLIRQGDISSAEKELSILQQRLD
SLSWKIVELELSIRNKSKQQ*

  Nucleotide sequence: 1263 bp    

>T6CP015516 NZ_LMTD01000002:177610-178872 [Vibrio vulnificus] [TssA]
ATGTCTAATGTAATTTTCATTGACAATCTTTGTTATCGGTTAACCTCAGATTCGCAAGAAATTAGAGGGTTAGAACCTTA
CTTTAAAATTCGAGAAGAAATAAACCGCCGCTTCAATCCTATTGTAGGTGGTACGGATTGGCAGTGTGTAAAAGAGCAAT
GTGAACTACTCGCTTTTCATCAAGGAATGGATTTCTTGGTATGTGGCTACTATGCGGTAGCTTGCCTAAAAACTCAGGGC
TTATCTGGTTACGCTAAAGGTATGGAATTAATGAGTGCTAGCCTTGCTAATCAAGGTGAATGTGATGTCAAAAGTGCCAA
AATACGTAAAGAGATTCTAGATTGGGTGAATGCACGTGTCGTACATGAATTGAAAACGCTCAAACCTAATTATGAATCAT
TGAGAGAGCTTTATCGTGCCGAGCGTTATTGTGAGCGTCTACATCAGTTATTTGAGTACCAGCAAACCGAGTACAAAGTT
GATTTTGAGGGCGTCGGTTTTGCACTGTTTGAGCATATTGACAGGATCGAAACTCATTATCACAGTTTGCTTAAAAAACA
GGAGAAAAATCAACTTCCCGAGCTCAAGTTATGGCAAAGACATTATGGTCTGGCAATGCTTGGTGGATTGGGTATTGTAA
TAGGTCTAATTGGCGGATATTGGGTGTGGCCTTGGTTACATACCACACCGTATGCAGCTCCACAAATTGTAACAACGCTA
AATGACGAAACAAAATCTCACTCTTTGATCGCTGAATCATCTCAAGCTGAACGACTTCGTTGGCAAAATACTCTTATTCC
ACTTTATCGCTCTACTCTAGAGCAAAATTTATCAGCTCCTTTTAATGCCTCAAAACAACAGGCCAACAGCCATCTTATAT
TGCTGAAAAAACTGTACCCTAAGGATGAGCGAGTTACTACTCTTAGCCAAGAGTTCAGTCAGAAGCAACAAATTGCGTTG
GAACAAACGGAAATGTTTGTTAGCAAATTTAGTGAAATAAGGACCAAAATGGCCAATATTGCGCTGCTTGCAAAAAAGGG
CAGATGGAAGGAACTGGAAAAACAAACCAAATCGCTCGAAGATTTTGCAGTGAGCCTGTCACCGATTTATGGCAGGGTTG
ATTATGTGCAAGGCTTAATTCGGCAAGGTGACATTTCTAGCGCAGAGAAAGAGCTATCAATTCTTCAACAAAGACTAGAT
AGTTTGAGCTGGAAAATTGTTGAACTGGAACTGAGTATCCGCAATAAATCGAAACAGCAGTAA