Detailed information of component protein


Summary

Component ID T6CP015514
Component protein type TssA
T6SS ID (Type) T6SS01235 experimental (Type i1)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (468 a.a.); Nucleotide sequence (1404 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS01770
Coordinate (Strand) 172596..173999 (+)
NCBI ID 1119685164
RefSeq NZ_LMTD01000002
Uniprot ID UPI000929E90E
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 1.3e-73 214..462
ImpA_N PF06812.14 1.9e-23 12..125
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-467 MEINQYRQCISKPVTNDNPIGERLVDHPLFDFIEEQMMKVGSLSHATVQWEEVEHSTIKLLSEQSKDIKLLVYLLQCLHNQITPLRFITSFLVMSEFIEQYWNESYPAPGARGNLPRRKYFSQMTQRFSTVVDKFDFCHLDAADRQALQAAVGEWKLVIEKQGLLSDLVESIAVRIEAEIQRAEKQQSSVQNVEQMTPSMPATTPSSSIVADHSSDKAAKQTLLKVADFLAEQDFGIPLSIRLRRFAVWGSITSLPDHNPDGQTLLRSMQADRVKDYQAQLRHADLALWRKVEQSLTMSPYWFEGQWMSYTIAQQLGKSDWSEAIAEETQSFLHRLPSLFDLKFKDGDPFVSESVKEWLATIGQKESSSVQAIEGGWQEKRKVAFQLAKEGGIAVALSMLNDGLVGAVEPRDKFYWRLLSADLLRANHLDAMAGEQYQTLLEQATTMSVPEWEPSLIEQIQRYTTSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9966 - -


  Protein sequence: 468 a.a.    

>T6CP015514 NZ_LMTD01000002:172596-173999 [Vibrio vulnificus] [TssA]
MEINQYRQCISKPVTNDNPIGERLVDHPLFDFIEEQMMKVGSLSHATVQWEEVEHSTIKLLSEQSKDIKLLVYLLQCLHN
QITPLRFITSFLVMSEFIEQYWNESYPAPGARGNLPRRKYFSQMTQRFSTVVDKFDFCHLDAADRQALQAAVGEWKLVIE
KQGLLSDLVESIAVRIEAEIQRAEKQQSSVQNVEQMTPSMPATTPSSSIVADHSSDKAAKQTLLKVADFLAEQDFGIPLS
IRLRRFAVWGSITSLPDHNPDGQTLLRSMQADRVKDYQAQLRHADLALWRKVEQSLTMSPYWFEGQWMSYTIAQQLGKSD
WSEAIAEETQSFLHRLPSLFDLKFKDGDPFVSESVKEWLATIGQKESSSVQAIEGGWQEKRKVAFQLAKEGGIAVALSML
NDGLVGAVEPRDKFYWRLLSADLLRANHLDAMAGEQYQTLLEQATTMSVPEWEPSLIEQIQRYTTSE*

  Nucleotide sequence: 1404 bp    

>T6CP015514 NZ_LMTD01000002:172596-173999 [Vibrio vulnificus] [TssA]
ATGGAAATAAACCAATATCGTCAGTGCATTTCCAAACCTGTTACCAATGACAATCCAATTGGAGAGCGATTGGTCGATCA
CCCGCTGTTTGATTTCATTGAAGAGCAAATGATGAAAGTTGGATCACTTTCTCATGCTACGGTGCAGTGGGAAGAGGTTG
AGCATAGTACGATTAAGTTACTTAGCGAGCAAAGTAAAGACATCAAGCTATTGGTTTATCTGCTTCAATGCTTGCATAAC
CAAATTACCCCTTTGCGCTTCATTACTTCTTTTTTAGTGATGAGCGAGTTTATCGAGCAGTATTGGAATGAGTCTTACCC
TGCACCAGGTGCTCGTGGCAACCTACCTAGGCGCAAGTATTTTAGTCAGATGACACAACGTTTTAGTACGGTTGTTGATA
AGTTTGATTTTTGCCATCTTGACGCAGCTGATCGTCAAGCGTTGCAAGCAGCTGTTGGGGAATGGAAACTTGTAATCGAA
AAGCAGGGGCTGTTATCAGATTTAGTTGAATCAATAGCGGTCCGTATCGAAGCGGAGATTCAACGTGCAGAAAAGCAGCA
GTCATCGGTTCAGAACGTAGAACAAATGACGCCAAGCATGCCAGCAACGACTCCTAGTTCCAGTATTGTAGCTGACCACT
CTAGCGATAAAGCAGCAAAGCAGACACTACTCAAAGTTGCTGATTTTTTAGCTGAGCAAGATTTTGGAATACCACTATCT
ATTCGGTTACGGCGTTTTGCAGTATGGGGCAGTATTACTTCTCTTCCGGATCATAACCCTGATGGTCAAACTCTACTAAG
AAGTATGCAAGCAGATCGTGTCAAAGATTACCAAGCGCAACTGCGTCATGCAGATTTAGCACTATGGCGGAAAGTGGAAC
AAAGCTTAACGATGTCTCCGTACTGGTTTGAAGGTCAGTGGATGAGCTACACCATTGCCCAGCAACTTGGGAAAAGTGAT
TGGTCTGAGGCCATTGCAGAAGAGACACAATCCTTCTTACATCGTCTACCTTCATTGTTTGACCTCAAATTCAAAGATGG
AGACCCTTTTGTGAGCGAATCAGTTAAAGAGTGGTTAGCCACTATCGGACAAAAGGAATCATCCTCTGTACAAGCAATAG
AGGGAGGTTGGCAAGAAAAACGAAAAGTCGCATTCCAACTTGCTAAGGAAGGAGGAATTGCTGTGGCACTTTCCATGCTG
AACGATGGATTAGTTGGAGCAGTAGAACCACGTGACAAGTTTTACTGGAGATTATTATCAGCTGATTTGTTACGTGCGAA
TCATCTTGATGCGATGGCTGGTGAACAGTACCAAACTTTGCTCGAGCAGGCGACGACAATGTCAGTGCCTGAGTGGGAGC
CAAGCTTAATTGAACAAATTCAAAGATATACAACGTCAGAGTAA