Detailed information of component protein


Summary

Component ID T6CP015509
Component protein type TssK
T6SS ID (Type) T6SS01235 experimental (Type i1)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS01745
Coordinate (Strand) 165587..166921 (+)
NCBI ID 782645131
RefSeq NZ_LMTD01000002
Uniprot ID A0A2S3R391_VIBVL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.9e-155 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MFARNRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIERAVGVMPDGTTFRIPQEDHLPDALEITDASLANQIVYLVVPLRSESLMEINWPEERGTGRYVSRRLEVRDVHSIQGDSTTIDVSPVRLQLMLEREDRSSYASVAIGRIMEKRPDGSVVLDPEFIPCHLNVVGIPALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQALNRMQPQMKHLAELRSLHPERLYECLSSVCGELATFTDESRLPPTLPSYNHDLPSHSFQPLIRSLRQSLSVVLEPRAVSIQLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLEELRRLFTQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYHAGYTYYQLDKTSAAWEMLIHSSGFAFHVAAAFEDLDLQFWAIRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9947 - -


  Protein sequence: 445 a.a.    

>T6CP015509 NZ_LMTD01000002:165587-166921 [Vibrio vulnificus] [TssK]
MFARNRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIERAVGVMPDGTTFRIPQE
DHLPDALEITDASLANQIVYLVVPLRSESLMEINWPEERGTGRYVSRRLEVRDVHSIQGDSTTIDVSPVRLQLMLEREDR
SSYASVAIGRIMEKRPDGSVVLDPEFIPCHLNVVGIPALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQA
LNRMQPQMKHLAELRSLHPERLYECLSSVCGELATFTDESRLPPTLPSYNHDLPSHSFQPLIRSLRQSLSVVLEPRAVSI
QLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLEELRRLFTQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYH
AGYTYYQLDKTSAAWEMLIHSSGFAFHVAAAFEDLDLQFWAIRS*

  Nucleotide sequence: 1335 bp    

>T6CP015509 NZ_LMTD01000002:165587-166921 [Vibrio vulnificus] [TssK]
ATGTTTGCGCGTAACCGAGTGATCTGGAATGAAGGGCTATTTATTAAACCTCAACATTTTCAGCAACAACAGAGATATAC
AGAGTACTGTCTAGATGAACGACTGAGTACTGTTAGCCGTTATCTATATGGTATTTCAGAGTTATCACTCAATCCTGAAT
ATCTCTCTTTTGGTCGTATAGCGATTGAACGAGCTGTGGGAGTAATGCCGGATGGTACGACTTTTCGCATTCCTCAAGAA
GATCACTTACCTGATGCACTAGAGATAACAGATGCTTCATTAGCAAACCAAATTGTCTATTTGGTTGTACCACTGCGTAG
TGAGTCATTAATGGAAATAAACTGGCCTGAAGAGCGAGGAACTGGCCGATATGTTAGCCGTCGCTTAGAAGTACGAGATG
TGCACAGTATTCAAGGAGACAGCACGACAATCGATGTCTCACCAGTGCGTTTGCAACTCATGTTAGAGCGTGAAGATCGA
AGCTCATATGCATCAGTCGCAATTGGGCGAATTATGGAAAAACGGCCTGATGGGAGTGTCGTTCTCGACCCTGAGTTTAT
TCCTTGTCATCTGAATGTAGTAGGAATTCCTGCGTTACACCGCTTTATCAATGAAATGTCTGGTTTAATGCGTGAAAGGG
CAAAAAACATTGCTCAACGAATTAGCTCGCCAGCGCAGGGAGGGGTAGCAGATGTCTCGGATTTTATGTTGCTCCAAGCT
CTTAATCGCATGCAACCTCAAATGAAGCATTTAGCTGAACTACGTAGTTTACATCCAGAGCGCTTGTACGAGTGTTTATC
ATCGGTATGTGGAGAGCTCGCCACATTTACCGACGAAAGTCGTTTGCCGCCTACTTTACCGAGTTATAACCATGACTTAC
CAAGCCACTCGTTTCAACCACTAATTCGCAGTTTACGTCAGAGCTTAAGTGTCGTTTTGGAACCTCGCGCAGTGTCAATC
CAATTAGATAAACGTAAGTATGGCTTGATGGTTGCCCCAATACACGATCCGCAGTTGATGGAAAGCGCTGAATTTATCAT
TGCAGTTAAAGCGCGTATGCCTCTTGAGGAGCTTCGCCGTTTGTTTACTCAGCAAACCAAAGTGGCTTCGGTAGAGAAAA
TTCGTGAGCTGATTTCATTACAATTGCCTGGCATTCCACTTACACCGTTGCCCGTTGCCCCACGTCAATTGCCGTACCAC
GCTGGCTACACCTACTACCAATTGGACAAAACTAGCGCAGCTTGGGAGATGTTGATTCACTCTAGTGGATTTGCGTTCCA
TGTTGCAGCCGCGTTTGAAGACCTTGATCTGCAGTTTTGGGCCATTAGGAGTTAG