Detailed information of component protein


Summary

Component ID T6CP015518
Component protein type TssI
T6SS ID (Type) T6SS01235 experimental (Type i1)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (688 a.a.); Nucleotide sequence (2064 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS01790
Coordinate (Strand) 180053..182116 (+)
NCBI ID 1119685156
RefSeq NZ_LMTD01000002
Uniprot ID UPI00092884E5
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 9.8e-73 42..335
Phage_base_V PF04717.14 3.7e-15 392..459
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-687 MAKLTFTLTVDGLPEETFVVTSYQGKESLSDSPFDVSQACYGFRYNIELASRQSSIRAQQVVDKAAQLTMKRDGEAVQYVNGIVRQFSHGDIGHHHTSYSLILVSALERLSLRHNSRIFQFKTTQDIISQILQEMGVVDFSFALKRTLSQREFCVQYRETDLAFVHRLAAEEGITYYMEQADGKHTVVFFDDSALIKKYSGPVPHNGLAGGLADEPFVSQFRMEHQREASHLVLKDYSFKKPNYGFLQEQQGTDLSFQQSTYEHYDFPGRYKDDGSGSAFSQTRLEFLRRDSDLGRGKSNHPALQAGVKFDLSENLEASANRDWVVVEVAHQGTQPQALEEDGGHGATTYSNQFTVIPANKTWRAKPQPKPQVDGPMIAKVVGPAGEEIYCDEHGRVKVHFPWDRESKQNEHSSCWIRVSQGWAGAQYGFMAIPRIGHEVIVSFLHGDPDQPIITGRTYHATNVTPYILPNHKTRTVIKTQTHQGEGSNEIRFEDQASIEQIFIHAQKDQDIITENNHRELVGVDRHLRVGRNWLQMITENVNRMVGKNVIEEFGQDHQIKIGRDVIKQILGKISQHVVGGIISKIDGSAVTQIGASEEKEIGANQRVSVANESYLKATKVVLEAGDSLTIKGPGGFVKIDGGGVTISGTKVKINEGGSPDTGTHPAMIKPQDPDKPQEPDGPDERG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9740 - -


  Protein sequence: 688 a.a.    

>T6CP015518 NZ_LMTD01000002:180053-182116 [Vibrio vulnificus] [TssI]
MAKLTFTLTVDGLPEETFVVTSYQGKESLSDSPFDVSQACYGFRYNIELASRQSSIRAQQVVDKAAQLTMKRDGEAVQYV
NGIVRQFSHGDIGHHHTSYSLILVSALERLSLRHNSRIFQFKTTQDIISQILQEMGVVDFSFALKRTLSQREFCVQYRET
DLAFVHRLAAEEGITYYMEQADGKHTVVFFDDSALIKKYSGPVPHNGLAGGLADEPFVSQFRMEHQREASHLVLKDYSFK
KPNYGFLQEQQGTDLSFQQSTYEHYDFPGRYKDDGSGSAFSQTRLEFLRRDSDLGRGKSNHPALQAGVKFDLSENLEASA
NRDWVVVEVAHQGTQPQALEEDGGHGATTYSNQFTVIPANKTWRAKPQPKPQVDGPMIAKVVGPAGEEIYCDEHGRVKVH
FPWDRESKQNEHSSCWIRVSQGWAGAQYGFMAIPRIGHEVIVSFLHGDPDQPIITGRTYHATNVTPYILPNHKTRTVIKT
QTHQGEGSNEIRFEDQASIEQIFIHAQKDQDIITENNHRELVGVDRHLRVGRNWLQMITENVNRMVGKNVIEEFGQDHQI
KIGRDVIKQILGKISQHVVGGIISKIDGSAVTQIGASEEKEIGANQRVSVANESYLKATKVVLEAGDSLTIKGPGGFVKI
DGGGVTISGTKVKINEGGSPDTGTHPAMIKPQDPDKPQEPDGPDERG*

  Nucleotide sequence: 2064 bp    

>T6CP015518 NZ_LMTD01000002:180053-182116 [Vibrio vulnificus] [TssI]
ATGGCAAAGTTAACATTCACCCTAACCGTTGATGGATTACCGGAAGAAACATTTGTAGTTACAAGCTACCAAGGCAAAGA
ATCTCTCTCGGATTCACCTTTTGATGTTTCTCAAGCTTGTTATGGTTTTCGCTATAATATTGAGCTAGCGAGCCGACAAT
CGAGTATTCGTGCTCAACAAGTGGTGGATAAAGCAGCACAACTGACCATGAAACGCGACGGCGAGGCAGTGCAGTATGTC
AATGGTATTGTGCGTCAGTTTTCTCATGGGGATATAGGCCATCATCATACCTCATATTCACTCATCTTAGTCTCAGCCCT
TGAGCGTTTATCGCTTCGCCACAATAGCCGCATTTTTCAATTTAAAACGACTCAAGACATTATTAGTCAGATATTGCAAG
AGATGGGCGTAGTGGACTTTAGCTTTGCGTTAAAAAGAACGCTTTCTCAGCGTGAATTCTGCGTGCAATACCGCGAAACA
GATTTGGCTTTTGTCCATCGTTTAGCGGCAGAGGAAGGCATCACGTATTACATGGAACAAGCGGATGGCAAACATACGGT
AGTGTTCTTTGATGACAGTGCGCTTATAAAAAAATACTCAGGGCCGGTGCCTCATAATGGACTTGCTGGTGGTCTTGCTG
ATGAGCCTTTTGTTTCCCAATTTAGAATGGAGCATCAACGTGAGGCAAGCCACTTGGTTTTGAAAGATTATAGTTTTAAA
AAACCAAACTATGGATTCTTACAAGAGCAACAGGGCACAGATTTAAGCTTCCAACAAAGCACTTATGAACACTACGACTT
CCCAGGGCGATACAAAGACGATGGCTCTGGCAGTGCTTTTAGTCAAACGCGCTTAGAATTCTTACGTCGTGACTCCGATT
TAGGGCGTGGGAAAAGTAATCATCCGGCACTTCAAGCGGGTGTCAAATTTGATTTAAGCGAAAACCTAGAGGCGAGCGCC
AACCGCGATTGGGTCGTGGTTGAAGTGGCTCACCAAGGTACACAACCTCAAGCTCTAGAAGAGGACGGAGGCCATGGAGC
CACCACCTATTCAAATCAGTTTACCGTTATACCGGCTAATAAAACGTGGCGTGCGAAACCTCAGCCGAAGCCACAGGTTG
ATGGCCCAATGATAGCGAAGGTGGTTGGCCCAGCAGGTGAAGAAATCTACTGTGACGAACATGGTCGAGTGAAAGTCCAT
TTTCCATGGGACAGAGAGAGTAAGCAGAACGAACACAGCTCCTGTTGGATTCGTGTATCTCAAGGCTGGGCCGGGGCTCA
ATATGGTTTTATGGCTATTCCACGTATAGGTCATGAAGTTATCGTCTCGTTTCTGCATGGCGATCCTGACCAACCCATCA
TCACTGGTCGCACATATCACGCGACTAATGTGACACCTTATATACTGCCAAACCATAAGACTCGCACTGTTATAAAAACA
CAAACCCATCAGGGGGAAGGTTCTAACGAAATCCGCTTCGAAGATCAGGCCAGTATTGAGCAAATCTTCATTCACGCACA
GAAAGATCAAGACATCATTACCGAGAATAATCATCGTGAGCTTGTAGGTGTAGATCGACACTTGAGAGTAGGTCGAAACT
GGTTGCAAATGATCACTGAAAATGTCAATCGAATGGTTGGCAAAAATGTGATTGAAGAATTTGGTCAAGATCATCAGATC
AAAATTGGCAGAGATGTAATTAAACAGATTTTAGGCAAGATAAGTCAACACGTTGTAGGCGGAATCATCTCTAAGATTGA
TGGAAGTGCAGTCACTCAAATTGGCGCATCTGAAGAAAAAGAAATTGGTGCGAACCAACGTGTGAGCGTTGCTAACGAAA
GCTACTTAAAAGCAACCAAAGTTGTACTAGAAGCCGGAGACTCCCTCACAATTAAGGGACCAGGTGGGTTCGTTAAAATT
GATGGCGGTGGGGTAACTATTTCAGGAACCAAAGTCAAAATTAACGAAGGAGGTTCACCTGATACTGGTACACATCCTGC
TATGATCAAGCCGCAAGACCCTGATAAACCTCAAGAACCTGATGGTCCGGATGAGAGGGGGTAA