Detailed information of component protein
Summary
| Component ID | T6CP015517 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01235  (Type i1) |
| Strain | Vibrio vulnificus 106-2A |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VV1062A_RS01785 |
| Coordinate (Strand) | 179429..179947 (+) |
| NCBI ID | 1119685158 |
| RefSeq | NZ_LMTD01000002 |
| Uniprot ID | A0A2S3R3A4_VIBVL |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 4.7e-34 | 6..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHIVTVPTDPQSGQPSGQRVHKPFKFTVCLNKAVPLLYNALSSGEKLKSVELKWYRTSIEGKQENFFTTKLENASIVDIHCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGTSGSDDWRKPIEA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.7816 | - | - |
Protein sequence: 173 a.a.
>T6CP015517 NZ_LMTD01000002:179429-179947 [Vibrio vulnificus] [TssD]
MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHIVTVPTDPQSGQPSGQRVHKPFKFTVCLNKAVPL
LYNALSSGEKLKSVELKWYRTSIEGKQENFFTTKLENASIVDIHCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGT
SGSDDWRKPIEA*
MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHIVTVPTDPQSGQPSGQRVHKPFKFTVCLNKAVPL
LYNALSSGEKLKSVELKWYRTSIEGKQENFFTTKLENASIVDIHCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGT
SGSDDWRKPIEA*
Nucleotide sequence: 519 bp
>T6CP015517 NZ_LMTD01000002:179429-179947 [Vibrio vulnificus] [TssD]
ATGCCAACTCCATGTTATATATCGATTGAGGGACAAACTCAGGGTCTTATCACCGCAGGTGCATGTACTGCAGATTCTAT
CGGTGATTCATTCGTTGAAGGCCATGAAGATGAAATGCTTGTGCAGCAGTTTGATCACATTGTAACCGTTCCAACTGATC
CACAATCGGGCCAGCCGTCAGGTCAACGTGTTCACAAACCGTTCAAATTTACAGTTTGCTTGAATAAAGCTGTTCCACTT
CTATACAACGCATTGTCGTCTGGTGAAAAGTTGAAATCTGTTGAACTAAAGTGGTACCGCACCTCTATTGAAGGTAAGCA
AGAAAACTTCTTCACGACCAAACTTGAAAATGCCTCAATCGTTGACATTCATTGTGAAATGCCTCACTGCCAGGATCCAG
CCAAGTCTGACTTTACTCAAAACGTAACAGTGTCACTTTCTTATCGTAAAATTACGTGGGATCACGTGAATGCAGGTACG
TCAGGTTCTGACGACTGGCGTAAACCAATCGAGGCTTAA
ATGCCAACTCCATGTTATATATCGATTGAGGGACAAACTCAGGGTCTTATCACCGCAGGTGCATGTACTGCAGATTCTAT
CGGTGATTCATTCGTTGAAGGCCATGAAGATGAAATGCTTGTGCAGCAGTTTGATCACATTGTAACCGTTCCAACTGATC
CACAATCGGGCCAGCCGTCAGGTCAACGTGTTCACAAACCGTTCAAATTTACAGTTTGCTTGAATAAAGCTGTTCCACTT
CTATACAACGCATTGTCGTCTGGTGAAAAGTTGAAATCTGTTGAACTAAAGTGGTACCGCACCTCTATTGAAGGTAAGCA
AGAAAACTTCTTCACGACCAAACTTGAAAATGCCTCAATCGTTGACATTCATTGTGAAATGCCTCACTGCCAGGATCCAG
CCAAGTCTGACTTTACTCAAAACGTAACAGTGTCACTTTCTTATCGTAAAATTACGTGGGATCACGTGAATGCAGGTACG
TCAGGTTCTGACGACTGGCGTAAACCAATCGAGGCTTAA