Detailed information of component protein
Summary
| Component ID | T6CP015508 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS01235  (Type i1) |
| Strain | Vibrio vulnificus 106-2A |
| Replicon | chromosome |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VV1062A_RS01740 |
| Coordinate (Strand) | 165104..165580 (+) |
| NCBI ID | 1119685239 |
| RefSeq | NZ_LMTD01000002 |
| Uniprot ID | UPI000932A026 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 8e-29 | 30..145 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-158 | VNKALWMVFTFMVLTACSSSGKYEPAKEPTKITLSLVSAEEVNPNIWGEASPIEIQVFELADDSMFMSSDYDQMKNDYKKVLRSNFIKNYDYVLTPGQFKFVNAFEVDADTNYIGIMAHFAEPELSEWKKVVKVLNKGREYHLLMLFKDYDVKLDKVE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9992 | pos: 16-17. LTA-CS. | VNKALWMVFTFMVLTA |
Protein sequence: 159 a.a.
>T6CP015508 NZ_LMTD01000002:165104-165580 [Vibrio vulnificus] [TssJ]
VNKALWMVFTFMVLTACSSSGKYEPAKEPTKITLSLVSAEEVNPNIWGEASPIEIQVFELADDSMFMSSDYDQMKNDYKK
VLRSNFIKNYDYVLTPGQFKFVNAFEVDADTNYIGIMAHFAEPELSEWKKVVKVLNKGREYHLLMLFKDYDVKLDKVE*
VNKALWMVFTFMVLTACSSSGKYEPAKEPTKITLSLVSAEEVNPNIWGEASPIEIQVFELADDSMFMSSDYDQMKNDYKK
VLRSNFIKNYDYVLTPGQFKFVNAFEVDADTNYIGIMAHFAEPELSEWKKVVKVLNKGREYHLLMLFKDYDVKLDKVE*
Nucleotide sequence: 477 bp
>T6CP015508 NZ_LMTD01000002:165104-165580 [Vibrio vulnificus] [TssJ]
GTGAACAAAGCACTGTGGATGGTATTTACATTTATGGTATTGACTGCTTGCAGTTCATCGGGGAAGTACGAACCAGCTAA
AGAGCCAACAAAGATAACCTTAAGCCTAGTAAGTGCTGAAGAGGTTAACCCAAATATCTGGGGAGAAGCTTCACCGATCG
AAATTCAGGTGTTTGAACTAGCCGATGACTCGATGTTCATGTCTTCGGACTATGACCAGATGAAAAATGACTATAAAAAA
GTGCTGCGTAGCAACTTTATTAAAAACTACGATTATGTATTGACTCCTGGGCAGTTCAAATTTGTGAACGCCTTTGAGGT
CGATGCGGACACAAACTACATCGGCATTATGGCTCATTTTGCTGAACCTGAACTTAGCGAATGGAAAAAAGTGGTTAAAG
TGCTGAACAAAGGGCGAGAGTATCACTTACTGATGTTGTTTAAGGACTACGATGTGAAATTGGACAAGGTGGAATAA
GTGAACAAAGCACTGTGGATGGTATTTACATTTATGGTATTGACTGCTTGCAGTTCATCGGGGAAGTACGAACCAGCTAA
AGAGCCAACAAAGATAACCTTAAGCCTAGTAAGTGCTGAAGAGGTTAACCCAAATATCTGGGGAGAAGCTTCACCGATCG
AAATTCAGGTGTTTGAACTAGCCGATGACTCGATGTTCATGTCTTCGGACTATGACCAGATGAAAAATGACTATAAAAAA
GTGCTGCGTAGCAACTTTATTAAAAACTACGATTATGTATTGACTCCTGGGCAGTTCAAATTTGTGAACGCCTTTGAGGT
CGATGCGGACACAAACTACATCGGCATTATGGCTCATTTTGCTGAACCTGAACTTAGCGAATGGAAAAAAGTGGTTAAAG
TGCTGAACAAAGGGCGAGAGTATCACTTACTGATGTTGTTTAAGGACTACGATGTGAAATTGGACAAGGTGGAATAA