Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
T6SS ID | T6SS01300 ![]() |
T6SS type | Type i4b |
Strain | Burkholderia gladioli strain NGJ1 |
Replicon (GenBank) | chromosome (LEKY01000012) |
Location | 91265..111362 |
Function | anti-bacterial; anti-eukaryotic; effector translocation |
Comment | Burkholderia gladioli strain NGJ1 utilizes two different type VI secretion systems for antibacterial activity, and T6SS-1-strain was defective in Hcp-1 secretion but proficient in Hcp-2 secretion. On the other hand, T6SS-2-strain was defective in secretion of Hcp-2 but proficient in secretion of Hcp-1 |
References | [1] Yadav SK, Magotra A, Ghosh S, Krishnan A, Pradhan A, Kumar R, Das J, Sharma M, Jha G. et al (2021) Immunity proteins of dual nuclease T6SS effectors function as transcriptional repressors.. EMBO Rep. 22(6):e51857. [PudMed:33786997] |

T6SS components and genome coordinates
Component | TagF | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssJ | TssK | TssL | TssM |
Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |

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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
---|---|---|---|---|---|---|---|
T6CP016222 | TssL | ACI79_RS13910 | 91265..92050 | - | 786 | 503461798 | - |
T6CP016223 | TssK | ACI79_RS13915 | 92047..93393 | - | 1347 | 836689638 | - |
T6CP016224 | TssJ | ACI79_RS13920 | 93494..94111 | - | 618 | 817530996 | - |
T6CP016225 | TssB | ACI79_RS13930 | 95172..95690 | + | 519 | 503461802 | - |
T6CP016226 | TssC | ACI79_RS13935 | 95706..97196 | + | 1491 | 503461803 | - |
T6CP016227 | TssD | ACI79_RS13940 | 97273..97776 | + | 504 | 503461804 | - |
T6CP016228 | TssE | ACI79_RS13945 | 97865..98347 | + | 483 | 503461805 | - |
T6CP016229 | TssF | ACI79_RS13950 | 98425..100263 | + | 1839 | 836689640 | - |
T6CP016230 | TssG | ACI79_RS13955 | 100227..101324 | + | 1098 | 516530522 | - |
T6CP016231 | TssH | ACI79_RS13960 | 101401..104076 | + | 2676 | 836689641 | - |
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.


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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
---|---|---|---|---|---|---|---|---|
No matching records found |


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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
---|---|---|---|---|---|---|---|
EFF01897 ![]() | ACI79_RS29395 (23tge) | Tge | - | Burkholderia gladioli NGJ1 | chromosome (LEKY01000073) | 105319..106497 (+) | 920807605 |
EFF01898 ![]() | ACI79_RS26075 (13tle) | Tle | - | Burkholderia gladioli NGJ1 | chromosome (LEKY01000069) | 193895..195619 (+) | 836691417 |
EFF01899 ![]() | ACI79_RS23485 (9tle) | Tle | - | Burkholderia gladioli NGJ1 | chromosome (LEKY01000068) | 142254..143846 (+) | 836691007 |
EFF01902 ![]() | ACI79_RS09760 (12tpe) | Tpe | - | Burkholderia gladioli NGJ1 | chromosome (LEKY01000008) | 79857..82490 (+) | 836689122 |
EFF01901 ![]() | AC179_RS13930 (Hcp-1) | - | - | Burkholderia gladioli NGJ1 | chromosome (LEKY01000012) | 95172..95690 (+) | 503461802 |
Showing 1 to 5 of 5 rows


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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
---|---|---|---|---|---|---|
No matching records found |

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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
---|---|---|---|---|---|---|---|---|
No matching records found |