Detailed information of component protein


Summary

Component ID T6CP016231
Component protein type TssH
T6SS ID (Type) T6SS01300 experimental (Type i4b)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (892 a.a.); Nucleotide sequence (2676 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS13960
Coordinate (Strand) 101401..104076 (+)
NCBI ID 836689641
GenBank LEKY01000012
Uniprot ID UPI000649D728
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.7e-42 621..789
AAA_lid_9 PF17871.3 6.9e-27 376..465
ClpB_D2-small PF10431.11 2.2e-10 796..867
AAA PF00004.31 1.7e-09 234..346
Clp_N PF02861.22 9.2e-09 25..74
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-891 MSTPLKTLIAKLNPTCRKAAERAASLCFARGHYEVDLEHLFVALLDETSGDMPVVLRASGVDPHALRADLERELESLKRGNTRTPVFSVHLSELFEQAWLIASLDAQIGRIRSGHLLLALLSAPDLAQFAQRMSPQFARVRVTDLKHKFDEITAGSNEAEPREADAGAGDQTDVAAEAAAGAAGGPSKTPALDTYTTNLTQRAREGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVGKTAVVEGLALRIAAGDVPPPLAGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPSEPLAAAMLRGMAGLMERHFNVRILDDAITEAVRLSHRYISGRQLPDKAISVLDTACAKVALAQSATPAVIDDTSKRLERTDAEIASLEREVAGGASHEERLAVLRVAREADVAALETARRRYAEEQAVVAEIVALRARIDAAREGSAEGERIDEDAVRAELAERIAALAALQGVEPMVPLQVDGHVVAEIVAAWTGIPLGRMVKDEIETVMNLNALLGARVIGQDHALDAVSQRVRTATAGLEDPNKPRGVFMFVGPSGVGKTETALALADVLYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGAMDDAEGREIDFRNTLIILTSNVGSSQVMQACLNKPQEDLPDPDALAETLRPALYKAFKPAFLGRMKVVPYYPISDEVLVEIIELKLDRIRRRIEANHKAAFEWDESLVEAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLERLADGTALKRIAVRASEAGEFEYTVE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9927 - -


  Protein sequence: 892 a.a.    

>T6CP016231 LEKY01000012:101401-104076 [Burkholderia gladioli] [TssH]
MSTPLKTLIAKLNPTCRKAAERAASLCFARGHYEVDLEHLFVALLDETSGDMPVVLRASGVDPHALRADLERELESLKRG
NTRTPVFSVHLSELFEQAWLIASLDAQIGRIRSGHLLLALLSAPDLAQFAQRMSPQFARVRVTDLKHKFDEITAGSNEAE
PREADAGAGDQTDVAAEAAAGAAGGPSKTPALDTYTTNLTQRAREGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAG
VGKTAVVEGLALRIAAGDVPPPLAGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQ
AGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPSEPLAAAMLRGMAGLMERHFNVRILDDA
ITEAVRLSHRYISGRQLPDKAISVLDTACAKVALAQSATPAVIDDTSKRLERTDAEIASLEREVAGGASHEERLAVLRVA
READVAALETARRRYAEEQAVVAEIVALRARIDAAREGSAEGERIDEDAVRAELAERIAALAALQGVEPMVPLQVDGHVV
AEIVAAWTGIPLGRMVKDEIETVMNLNALLGARVIGQDHALDAVSQRVRTATAGLEDPNKPRGVFMFVGPSGVGKTETAL
ALADVLYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDK
GAMDDAEGREIDFRNTLIILTSNVGSSQVMQACLNKPQEDLPDPDALAETLRPALYKAFKPAFLGRMKVVPYYPISDEVL
VEIIELKLDRIRRRIEANHKAAFEWDESLVEAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLERLADGTALKRIAVRA
SEAGEFEYTVE*

  Nucleotide sequence: 2676 bp    

>T6CP016231 LEKY01000012:101401-104076 [Burkholderia gladioli] [TssH]
ATGAGCACGCCACTCAAGACCCTGATTGCGAAACTGAACCCGACCTGCCGCAAGGCGGCCGAACGCGCGGCGAGCCTGTG
TTTCGCGCGCGGCCACTACGAGGTCGATCTCGAGCACCTGTTCGTCGCGCTGCTCGACGAGACCAGCGGCGACATGCCGG
TGGTGCTGCGCGCCAGCGGCGTCGATCCGCATGCGCTGCGCGCCGACCTCGAACGCGAGCTGGAGAGCCTCAAGCGCGGC
AACACGCGCACGCCGGTGTTCTCGGTGCACCTGAGCGAGCTGTTCGAGCAGGCCTGGCTGATCGCCTCGCTGGACGCGCA
GATCGGGCGGATCCGCTCGGGCCACCTGCTGCTCGCGCTGCTGAGCGCGCCCGACCTGGCGCAGTTCGCGCAGCGCATGT
CGCCGCAGTTCGCGCGCGTGCGGGTGACCGACCTCAAGCACAAGTTCGACGAGATCACGGCCGGCTCGAACGAGGCCGAG
CCGCGCGAGGCCGATGCCGGCGCCGGCGACCAGACCGACGTGGCGGCCGAGGCGGCGGCCGGCGCCGCGGGCGGCCCGTC
GAAGACGCCCGCGCTCGACACCTACACCACCAACCTCACGCAGCGCGCCAGGGAAGGCAAGATCGACCCGGTGATCGGCC
GCGACGCCGAGATCCGCCAGGCGATCGACATCCTGATGCGGCGCCGCCAGAACAACCCGATCATGACCGGCGAGGCCGGG
GTCGGGAAGACCGCCGTGGTGGAAGGGCTGGCGCTGCGCATCGCCGCCGGCGATGTGCCGCCGCCCTTGGCCGGCGTGGC
GCTGCACGTGCTCGACATGGGCCTGCTGCAAGCCGGCGCGAGCGTGAAGGGCGAGTTCGAGAACCGCCTGAAGAGCGTGA
TCGACGAGGTCAAGAAGAGCGCGCACCCGATCATCCTGTTCATCGACGAGGCCCACACCATCATCGGCGCGGGCGGCCAG
GCCGGGCAGAACGATGCGGCCAACCTGCTCAAGCCGGCGTTGGCGCGCGGCGAGCTGCGCACCATCGCGGCCACCACCTG
GAGCGAGTACAAGAAGTACTTCGAGAAGGATGCTGCCTTGGCGCGGCGCTTCCAGGTGGTCAAGATCGAGGAACCCAGCG
AGCCGCTGGCGGCCGCCATGCTGCGCGGCATGGCCGGGCTGATGGAGCGCCACTTCAACGTGCGCATCCTGGACGACGCG
ATCACCGAGGCGGTGCGGCTCTCGCATCGCTACATCAGCGGCCGGCAACTGCCCGACAAGGCGATCAGCGTGCTCGACAC
CGCCTGCGCGAAGGTCGCGCTGGCGCAGAGCGCGACGCCGGCCGTGATCGACGACACCAGCAAGCGCCTGGAGCGCACCG
ACGCCGAGATCGCCTCGCTGGAGCGCGAGGTGGCCGGCGGCGCCTCGCACGAGGAACGGCTGGCGGTGCTGCGCGTGGCG
CGCGAGGCCGATGTGGCCGCGCTGGAGACGGCCCGGCGACGTTATGCCGAGGAGCAGGCGGTGGTGGCCGAGATCGTCGC
GCTGCGCGCGAGGATCGACGCGGCGCGCGAGGGCTCGGCCGAGGGCGAACGCATCGACGAGGACGCGGTGCGCGCCGAGC
TGGCCGAGCGCATCGCCGCGCTGGCGGCCCTGCAGGGCGTCGAGCCGATGGTGCCGCTGCAGGTCGACGGCCACGTGGTG
GCCGAGATCGTCGCGGCCTGGACCGGCATCCCGCTCGGGCGCATGGTCAAGGACGAGATCGAGACCGTGATGAATCTCAA
TGCCCTGCTCGGCGCGCGCGTGATCGGCCAGGACCACGCGCTCGACGCGGTGTCGCAGCGCGTGCGCACCGCCACCGCCG
GGCTGGAGGATCCGAACAAGCCGCGCGGCGTGTTCATGTTCGTCGGACCCTCGGGCGTGGGCAAGACCGAGACGGCGCTG
GCGCTGGCCGACGTGCTCTACGGCGGCGAGCGCAAGATGGTCACCATCAACATGAGCGAGTACCAGGAGGCGCACAGCGT
GTCGGGCCTGAAGGGCTCGCCGCCGGGTTACGTCGGCTACGGCGAGGGCGGCGTGCTGACCGAGGCGGTGCGCCGCAATC
CCTATTCGGTGGTGCTGCTCGACGAGGTCGAGAAGGCCCACCCGGACGTGCTGGAGATGTTCTTCCAGGTGTTCGACAAG
GGCGCGATGGACGACGCCGAGGGCCGCGAGATCGACTTCCGCAACACCCTGATCATCCTGACCTCGAACGTCGGTTCCAG
CCAGGTGATGCAGGCCTGCCTGAACAAGCCGCAAGAGGATCTGCCGGACCCCGACGCGCTCGCCGAGACGCTGCGCCCGG
CGCTCTACAAGGCCTTCAAGCCGGCCTTCCTCGGCCGCATGAAGGTGGTGCCCTATTACCCGATCTCGGACGAGGTGCTG
GTCGAGATCATCGAGCTGAAGCTGGATCGCATCCGCCGCCGCATCGAAGCCAACCACAAGGCCGCCTTCGAGTGGGACGA
GTCGCTGGTGGAGGCGGTGCTGGCGCGCTGCACCGAGGTCGATTCGGGCGCCCGCAACGTCGACCACATCCTCAATGGCA
CGCTGCTGCCCGAGATCGCCGGCCACGTGCTGGAGCGGCTCGCCGACGGCACCGCGCTCAAGCGCATCGCGGTGCGCGCC
AGCGAGGCCGGCGAATTCGAGTACACGGTGGAGTAA