Detailed information of component protein


Summary

Component ID T6CP016223
Component protein type TssK
T6SS ID (Type) T6SS01300 experimental (Type i4b)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS13915
Coordinate (Strand) 92047..93393 (-)
NCBI ID 836689638
GenBank LEKY01000012
Uniprot ID UPI00064A8F4D
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.1e-140 19..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESLQAIQPYNWGVRSVKLDRDAISSNVLRLSELSLIFPDGALYSAPQADDLPPPVALDTLPEGINDFTFYLALHPLREAGSNYVEDAEGGFLSRFTSNNAPVADQFTDAADADITFLKTNVKLIAHSEPRDQLLAIPLVRVRRTATSGFEFDDSFVPPCLAIEASGVLMQRLRQLIDALQAKVNALYGFHREPTKNIIEFRSGDIASFWLLHTANAAFASLAHLYQHSALHPERLFQELLRLAGQLMTFSKSYALADLPAYRHDDPGPPFARLDTMLRELLETVISTRYFAITLEEVRPSFHIGRLDSGKIDDKTEFYLAVSADMPSVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLSYTPQVPPAIPVRPGACYFALDARSPLYERMLQSQSAMIYAPSGINDLKFELIAVTS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9969 - -


  Protein sequence: 449 a.a.    

>T6CP016223 LEKY01000012:c93393-92047 [Burkholderia gladioli] [TssK]
MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESLQAIQPYNWGVRSVKLDRDAISSNVLRLSELSLIFPDGALYSAPQA
DDLPPPVALDTLPEGINDFTFYLALHPLREAGSNYVEDAEGGFLSRFTSNNAPVADQFTDAADADITFLKTNVKLIAHSE
PRDQLLAIPLVRVRRTATSGFEFDDSFVPPCLAIEASGVLMQRLRQLIDALQAKVNALYGFHREPTKNIIEFRSGDIASF
WLLHTANAAFASLAHLYQHSALHPERLFQELLRLAGQLMTFSKSYALADLPAYRHDDPGPPFARLDTMLRELLETVISTR
YFAITLEEVRPSFHIGRLDSGKIDDKTEFYLAVSADMPSVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLSYTPQVPPA
IPVRPGACYFALDARSPLYERMLQSQSAMIYAPSGINDLKFELIAVTS*

  Nucleotide sequence: 1347 bp    

>T6CP016223 LEKY01000012:c93393-92047 [Burkholderia gladioli] [TssK]
ATGAGTTATTCGGCCAAGGTGCTGTGGGGTGAAGGCCTGTTTCTGAGGCCGCAGCACTTTCAACGTCAGGACGCGTATCA
CGAGGCGCGCCTGTTCGAGTCGCTGCAGGCGATCCAGCCTTACAACTGGGGCGTGCGCTCGGTGAAGCTCGACCGCGACG
CGATCAGCAGCAACGTGCTGCGCCTGTCGGAGCTGTCGCTGATCTTCCCGGACGGCGCGCTCTACTCCGCGCCGCAGGCC
GACGACCTGCCGCCGCCGGTGGCGCTGGACACGCTGCCCGAGGGCATCAACGATTTCACCTTCTACCTGGCCCTGCACCC
GCTGCGCGAGGCCGGCTCGAACTACGTCGAGGACGCCGAGGGCGGTTTCCTGAGCCGTTTCACCAGCAACAATGCGCCGG
TCGCCGACCAGTTCACCGACGCGGCCGACGCCGACATCACCTTCCTGAAGACCAACGTCAAGCTGATCGCCCACAGCGAG
CCGCGCGACCAGTTGCTGGCGATCCCGCTGGTGCGCGTGCGCCGCACCGCCACCTCGGGTTTCGAGTTCGACGACAGCTT
CGTGCCGCCGTGCCTGGCGATCGAGGCCTCGGGGGTCCTGATGCAGCGGCTGCGCCAGCTGATCGACGCGCTGCAGGCCA
AGGTCAACGCGCTGTACGGCTTCCACCGCGAGCCGACCAAGAACATCATCGAATTCCGCTCGGGCGACATCGCCTCGTTC
TGGCTGCTGCACACGGCCAATGCCGCGTTCGCCTCGCTCGCCCACCTGTACCAGCATTCGGCACTGCATCCGGAGCGGCT
GTTCCAGGAACTGCTGCGCCTGGCCGGCCAGTTGATGACCTTCTCGAAGTCGTACGCGCTGGCCGACCTGCCGGCCTACC
GGCACGACGATCCGGGCCCGCCGTTCGCGCGCCTGGACACCATGCTGCGCGAGCTGCTCGAGACCGTGATCTCGACGCGC
TACTTCGCGATCACGCTGGAGGAGGTGCGGCCCTCGTTCCATATCGGCCGCCTCGATTCCGGCAAGATCGACGACAAGAC
CGAGTTCTACCTGGCCGTGTCGGCCGACATGCCCTCGGTCGAGCTGGTCGACGCGGTGCCGGCGCGTTTCAAGGTCGGCG
CGCCCGACGATGTCGACAAGCTGGTGCTGTCGGCCATGCCGGGCGTGCGCCTGTCCTACACGCCGCAGGTGCCGCCCGCG
ATTCCGGTGCGCCCGGGCGCCTGCTACTTCGCGCTCGATGCACGCAGCCCGCTGTATGAGCGGATGCTGCAATCGCAATC
GGCGATGATCTACGCGCCCTCGGGCATCAACGACCTCAAATTCGAACTGATCGCCGTCACATCATGA