Detailed information of component protein


Summary

Component ID T6CP016227
Component protein type TssD
T6SS ID (Type) T6SS01300 experimental (Type i4b)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS13940
Coordinate (Strand) 97273..97776 (+)
NCBI ID 503461804
GenBank LEKY01000012
Uniprot ID A0A095YCG2_BURGA, F2LI28_BURGS
KEGG ID bgo:BM43_1799, bgd:bgla_1g04120
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
T6SS_HCPPF05638.142.5e-415..138
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-167MLDIYLNFGNPAIKGESQDKDHANWIELKSWDWSVTQPRSATSSTSGGHTAERCEHSDMVFTKELDMASPLLYQHASGGTTFDEVSIDFMRSDGEGKRVKYLEIKLKYVIISSVTPSVQTEGLPVEQFSLKYAAVQWKQTKQNIGGNQGGNTQGAWSLTKNDKTYAV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9809--


  Protein sequence: 168 a.a.    

>T6CP016227 LEKY01000012:97273-97776 [Burkholderia gladioli] [TssD]
MLDIYLNFGNPAIKGESQDKDHANWIELKSWDWSVTQPRSATSSTSGGHTAERCEHSDMVFTKELDMASPLLYQHASGGT
TFDEVSIDFMRSDGEGKRVKYLEIKLKYVIISSVTPSVQTEGLPVEQFSLKYAAVQWKQTKQNIGGNQGGNTQGAWSLTK
NDKTYAV*

  Nucleotide sequence: 504 bp    

>T6CP016227 LEKY01000012:97273-97776 [Burkholderia gladioli] [TssD]
ATGTTAGATATCTATCTGAATTTCGGGAATCCGGCGATCAAGGGCGAATCGCAGGACAAGGACCACGCCAACTGGATCGA
GCTCAAGTCCTGGGACTGGTCGGTCACGCAACCGCGTTCGGCGACCTCGTCGACCTCGGGCGGCCACACGGCCGAGCGTT
GCGAACACAGCGACATGGTGTTCACCAAGGAACTCGACATGGCCAGCCCGCTGCTGTACCAGCACGCGTCGGGCGGCACC
ACCTTCGATGAAGTCTCGATCGACTTCATGCGTTCGGACGGCGAAGGCAAGCGCGTCAAGTACCTCGAGATCAAGCTGAA
GTACGTGATCATCTCGAGCGTCACGCCGAGCGTGCAGACCGAAGGCCTGCCGGTCGAGCAGTTCTCGCTGAAGTACGCTG
CCGTGCAGTGGAAGCAGACCAAGCAGAACATCGGCGGCAACCAGGGCGGCAACACGCAGGGCGCCTGGAGCCTGACCAAG
AACGACAAGACCTACGCGGTCTAA