Detailed information of component protein


Summary

Component ID T6CP016226
Component protein type TssC
T6SS ID (Type) T6SS01300 experimental (Type i4b)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (497 a.a.); Nucleotide sequence (1491 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS13935
Coordinate (Strand) 95706..97196 (+)
NCBI ID 503461803
GenBank LEKY01000012
Uniprot ID A0A095HUK1_BURGA, F2LI27_BURGS
KEGG ID bgd:bgla_1g04110, bgo:BM43_1798
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 7.7e-136 68..370
VipB_2 PF18945.2 9.2e-47 380..490
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-496 MNQQTAAAQQAGALEGAETSLLDEIVEKSKVAKSQSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLISAQMSAVMHAPEFQKLEGTWRGLDYLVSESNTGSTIKIKALHAPKRELVRDFKAATEFDQSALFKKVYEEEFGTFGGAPFGALVGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASAAPELIGLESFADLGKPRDLGKVFDTVEYAKWKSFRDAEDSRYVGLTLPRFLGRLPFHPKDGQTAESFNFVEDVDGTDHSKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYNTDSANANAVLSAQLQYIFSVSRIAHYLKAMMRDKIGSFASAQNVESFLNRWISQYVLLDDNATQEQKAQFPLREASVQVSEIPGKPGSYRSVAFLRPHFQLDELSISLRLVADLPKSANS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9716 - -


  Protein sequence: 497 a.a.    

>T6CP016226 LEKY01000012:95706-97196 [Burkholderia gladioli] [TssC]
MNQQTAAAQQAGALEGAETSLLDEIVEKSKVAKSQSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLISA
QMSAVMHAPEFQKLEGTWRGLDYLVSESNTGSTIKIKALHAPKRELVRDFKAATEFDQSALFKKVYEEEFGTFGGAPFGA
LVGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASAAPELIGLESFADLGKPRDLGKVFDTVEYAKWKSFRDAEDSRYVGL
TLPRFLGRLPFHPKDGQTAESFNFVEDVDGTDHSKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK
TDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYNTDSANANAVLSAQLQYIFSVSRIA
HYLKAMMRDKIGSFASAQNVESFLNRWISQYVLLDDNATQEQKAQFPLREASVQVSEIPGKPGSYRSVAFLRPHFQLDEL
SISLRLVADLPKSANS*

  Nucleotide sequence: 1491 bp    

>T6CP016226 LEKY01000012:95706-97196 [Burkholderia gladioli] [TssC]
ATGAATCAGCAAACGGCTGCGGCCCAACAGGCCGGTGCGCTCGAGGGCGCCGAAACCTCGCTGCTCGACGAGATCGTCGA
GAAGAGCAAGGTCGCGAAATCGCAATCGGAGCACGCGCGCGCCAAGGACCTGATCGGCGAACTCGTGCATCAGGTGCTCG
ACGGCACGGTGATCGTGTCGGACAACCTCTCGGCGACCATCGACGCGCGCGTCGCCGAACTCGACCGGCTCATTTCCGCG
CAGATGAGCGCGGTGATGCATGCGCCGGAATTCCAGAAGCTCGAGGGCACCTGGCGCGGCCTCGACTACCTGGTCTCGGA
GAGCAATACCGGCTCGACCATCAAGATCAAGGCCCTGCACGCGCCCAAGCGCGAGCTGGTGCGCGACTTCAAGGCCGCCA
CCGAGTTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAGGAAGAGTTCGGCACCTTCGGCGGCGCCCCGTTCGGCGCG
CTGGTCGGCGATTACGAAATCTCGCGCCAGCCCGAGGACATGTACTTCATCGAGCAGATGTCGCACGTGGCCGCGGCCGC
GCACGCGCCCTTCATCGCCTCGGCCGCGCCCGAGCTGATCGGCCTGGAGTCGTTCGCCGACCTGGGCAAGCCGCGCGACC
TCGGCAAGGTGTTCGATACCGTCGAGTACGCGAAGTGGAAGTCGTTCCGCGACGCCGAGGATTCGCGCTACGTGGGCCTC
ACGCTGCCGCGCTTCCTGGGCCGCCTGCCGTTCCATCCGAAGGACGGCCAGACCGCCGAGAGCTTCAACTTCGTCGAGGA
CGTGGACGGCACCGATCACTCCAAGTACCTGTGGTGCAACGCCGCCTGGGCGTTCGCGGCGCGCCTGACCGCCGCCTTCG
ACGACTTCGGCTGGTGCGCGGCGATCCGCGGCGTGGAGGGCGGGGGCCTGGTGGAAGACCTGCCGACCCACACCTTCAAG
ACCGACGACGGCGAGATCGCGCTGAAGTGCCCGACCGAGATCGCGATCACCGATCGTCGCGAGAAGGAGCTGAGCGACCT
CGGCTTCATCCCGCTGGTGCACTGCAAGAACTCCGACTATGCGGCCTTCTTCGCCGCGCAATCGGTCCAGAAACCCAAAA
AATACAATACCGATAGCGCGAATGCGAACGCCGTGCTGTCCGCTCAACTCCAGTACATCTTCTCGGTGTCGCGCATCGCG
CACTACCTGAAGGCGATGATGCGGGACAAGATCGGCAGCTTCGCCTCCGCGCAGAACGTGGAATCTTTCCTGAATCGCTG
GATCTCCCAGTACGTGCTGCTGGACGACAACGCGACGCAGGAACAGAAAGCGCAGTTTCCGCTGCGCGAAGCATCCGTGC
AGGTGTCCGAGATTCCGGGCAAGCCGGGTTCGTACCGTTCGGTCGCGTTCCTGCGTCCGCACTTCCAACTCGACGAGCTG
TCGATCTCGCTGCGCCTGGTCGCGGATCTGCCCAAATCGGCAAATTCATAA