Detailed information of component protein


Summary

Component ID T6CP016229
Component protein type TssF
T6SS ID (Type) T6SS01300 experimental (Type i4b)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (613 a.a.); Nucleotide sequence (1839 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS13950
Coordinate (Strand) 98425..100263 (+)
NCBI ID 836689640
GenBank LEKY01000012
Uniprot ID UPI000649808D
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.3e-189 2..608
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-612 MEELLPYYERELSFLRRYSHEFARRYPKIAARLAMTGEHCDDPHVERMIESFALLGARINKKLDDDYPEFTEALVDVLYPHYLRSFPSCSIAQFTPSANVSQQTAPHRVARGTELKSRAIRGVQCQFRTAYDVTIAPIRISEARYSSIAAAPAATVLPGNATGVISITFESMAPQFDLSGLKLPTLRAHLHGEQSFVAALADCLFINTLATYVESERNGRWTALRSSPVTQAGFEEHDALIDYPSRSHPAYRLLTEYFAFPDKFDFVDFDLAAMTRRAGPCHRLTLHIVLADVRSDSHVARLLDMLSATHLRLFCTPVVNLFKQNGEPIRIDHQSVSYPVIAEARRAFAYEVYSIDSVHLVRQTAHEESVVEFRPFYSLHHGEAGHVGHYWFARRNDWVAQHSPGYETEISIVDIDFEPSAPQTDTLSLRLTCTNRDLPAGLATGLAGGDLFADGGADFGDITMLRRPSPSVRFARGRAAHWRLISHLALNHVSLANDGLAPLKELLTLYDLRRSAVSTRHIDGLVAIEQRGAVQWLPGKPFATFVRGIEIRLTIDEEHFVGTSLASFVRMLDAFFGLYVHLNSFVQLIVVSKRTGEEIMRCKPRSGESILA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9916 - -


  Protein sequence: 613 a.a.    

>T6CP016229 LEKY01000012:98425-100263 [Burkholderia gladioli] [TssF]
MEELLPYYERELSFLRRYSHEFARRYPKIAARLAMTGEHCDDPHVERMIESFALLGARINKKLDDDYPEFTEALVDVLYP
HYLRSFPSCSIAQFTPSANVSQQTAPHRVARGTELKSRAIRGVQCQFRTAYDVTIAPIRISEARYSSIAAAPAATVLPGN
ATGVISITFESMAPQFDLSGLKLPTLRAHLHGEQSFVAALADCLFINTLATYVESERNGRWTALRSSPVTQAGFEEHDAL
IDYPSRSHPAYRLLTEYFAFPDKFDFVDFDLAAMTRRAGPCHRLTLHIVLADVRSDSHVARLLDMLSATHLRLFCTPVVN
LFKQNGEPIRIDHQSVSYPVIAEARRAFAYEVYSIDSVHLVRQTAHEESVVEFRPFYSLHHGEAGHVGHYWFARRNDWVA
QHSPGYETEISIVDIDFEPSAPQTDTLSLRLTCTNRDLPAGLATGLAGGDLFADGGADFGDITMLRRPSPSVRFARGRAA
HWRLISHLALNHVSLANDGLAPLKELLTLYDLRRSAVSTRHIDGLVAIEQRGAVQWLPGKPFATFVRGIEIRLTIDEEHF
VGTSLASFVRMLDAFFGLYVHLNSFVQLIVVSKRTGEEIMRCKPRSGESILA*

  Nucleotide sequence: 1839 bp    

>T6CP016229 LEKY01000012:98425-100263 [Burkholderia gladioli] [TssF]
ATGGAAGAGTTGCTGCCGTACTACGAGCGCGAATTATCGTTTTTACGGCGGTACTCGCACGAATTCGCCCGACGCTACCC
GAAGATCGCCGCGCGCCTGGCGATGACCGGCGAGCATTGCGACGACCCGCACGTCGAGCGCATGATCGAGTCCTTCGCGC
TGCTGGGCGCGCGCATCAACAAGAAGCTCGACGACGACTACCCGGAATTCACCGAGGCGCTGGTCGACGTGCTGTATCCG
CACTACCTGCGCTCCTTCCCGTCCTGTTCGATCGCGCAGTTCACGCCGAGCGCCAACGTCTCGCAGCAGACCGCGCCGCA
TCGGGTGGCGCGCGGCACCGAGCTGAAGAGCCGCGCGATCCGCGGGGTGCAATGCCAGTTCCGCACCGCCTACGACGTGA
CGATCGCGCCGATCCGCATCTCCGAGGCGCGCTATTCCTCGATCGCCGCCGCGCCGGCCGCCACCGTGCTGCCCGGCAAC
GCCACCGGCGTGATCTCGATCACCTTCGAATCGATGGCGCCGCAGTTCGACCTGTCCGGGCTCAAGCTGCCGACGCTGCG
CGCCCACCTGCACGGCGAGCAGTCCTTCGTCGCCGCGCTGGCCGACTGCCTGTTCATCAACACGCTCGCCACCTATGTCG
AGTCCGAGCGCAACGGCCGCTGGACCGCGCTGCGCAGCTCGCCCGTCACCCAGGCCGGCTTCGAGGAGCATGACGCGCTG
ATCGACTACCCGTCGCGCTCGCACCCGGCCTACCGCCTGCTGACCGAATACTTCGCGTTCCCCGACAAGTTCGACTTCGT
CGATTTCGACCTGGCCGCGATGACGCGCCGCGCCGGCCCCTGCCACCGCCTGACCCTGCACATCGTGCTGGCCGACGTGC
GCAGCGACTCACACGTGGCGCGGCTGCTCGACATGCTGAGCGCGACCCACCTGCGCCTGTTCTGCACGCCGGTGGTCAAC
CTGTTCAAGCAGAACGGCGAGCCGATCCGCATCGACCACCAGAGCGTCTCCTACCCGGTGATCGCCGAGGCGCGCCGCGC
CTTCGCCTACGAGGTCTATTCGATCGATTCGGTGCACCTGGTGCGCCAGACCGCGCACGAGGAGTCGGTGGTCGAGTTCC
GGCCCTTCTATTCGCTGCACCATGGCGAGGCCGGGCATGTCGGCCATTACTGGTTCGCGCGCCGCAACGACTGGGTGGCC
CAGCACAGCCCCGGCTATGAGACCGAGATCTCGATCGTCGACATCGACTTCGAGCCTTCCGCGCCGCAGACCGACACGCT
GAGCCTGCGCCTGACCTGCACCAACCGCGACCTGCCGGCGGGGCTGGCCACCGGCCTGGCCGGCGGCGACCTGTTCGCCG
ACGGCGGCGCCGATTTCGGCGACATCACGATGCTGCGCCGGCCCAGCCCCAGCGTGCGTTTCGCGCGCGGGCGCGCCGCC
CACTGGCGGCTGATCTCGCACCTGGCGCTGAACCACGTGTCGCTGGCCAACGACGGCCTGGCGCCGCTCAAGGAACTGCT
CACGCTCTACGACCTGCGCCGCTCGGCGGTCTCGACGCGGCATATCGACGGGCTGGTGGCGATCGAGCAGCGCGGCGCCG
TGCAATGGCTGCCCGGCAAGCCCTTCGCGACCTTCGTGCGCGGCATCGAGATCCGCCTGACGATCGACGAGGAGCACTTC
GTCGGCACCAGCCTGGCGTCCTTCGTGCGGATGCTCGACGCCTTCTTCGGCCTCTACGTCCACCTCAACAGCTTTGTCCA
ATTGATCGTCGTGTCCAAGCGCACCGGCGAGGAGATCATGCGATGCAAACCGCGCAGCGGCGAATCGATCCTGGCGTAG