Detailed information of component protein


Summary

Component ID T6CP016225
Component protein type TssB
T6SS ID (Type) T6SS01300 experimental (Type i4b)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS13930
Coordinate (Strand) 95172..95690 (+)
NCBI ID WP_013696463.1
GenBank LEKY01000012
Uniprot ID A0A560UTC8_9BURK, A0A095XG85_BURGA, F2LI26_BURGS
KEGG ID bgo:BM43_1797, bgd:bgla_1g04100
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
T6SS_VipAPF05591.143.1e-6012..163
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-172MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEVKELPFVVGVVGDLAGQSEVEMPKLRDRKFVNIDRDNFDDVMKAIEPRAAYQVENKLSEEGGKFAVDLKFRSLDDFDPDQVVNQIEPLRRLIEARSKLADLRNKLAGNDKLEDLLSEVLSNTQQLQALAKQSGGGDKEGE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9963--


  Protein sequence: 173 a.a.    

>T6CP016225 LEKY01000012:95172-95690 [Burkholderia gladioli] [TssB]
MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEVKELPFVVGVVGDLAGQSEVEMPKLRDRKFVNIDRDNFDDVMKAIEPR
AAYQVENKLSEEGGKFAVDLKFRSLDDFDPDQVVNQIEPLRRLIEARSKLADLRNKLAGNDKLEDLLSEVLSNTQQLQAL
AKQSGGGDKEGE*

  Nucleotide sequence: 519 bp    

>T6CP016225 LEKY01000012:95172-95690 [Burkholderia gladioli] [TssB]
ATGGCGAAAAAAGAAAGTATCCAGAAGCGCCTGCAAAAGGTACGGCCGCCCCGTGTGCAGCTGACCTACGAAGTCGAGCG
CGGCGACGCGATCGAGGTGAAGGAACTGCCGTTCGTGGTCGGCGTGGTCGGCGACCTGGCCGGTCAGTCCGAGGTCGAGA
TGCCGAAGCTGCGCGACCGCAAGTTCGTCAACATCGATCGCGACAACTTCGACGACGTGATGAAGGCGATCGAGCCTCGC
GCGGCCTACCAGGTCGAGAACAAACTCAGCGAGGAAGGCGGCAAGTTCGCCGTCGACCTCAAGTTCCGTTCGCTCGACGA
TTTCGATCCGGACCAGGTGGTCAACCAGATCGAACCGCTGCGCCGCCTGATCGAGGCGCGCTCGAAGCTGGCCGACCTGC
GCAACAAGCTGGCCGGCAACGACAAGCTCGAGGACCTGCTGAGCGAAGTGCTCAGCAACACGCAGCAGTTGCAGGCGCTC
GCGAAGCAGTCGGGCGGCGGCGACAAAGAGGGCGAATAA