Detailed information of component protein


Summary

Component ID T6CP016230
Component protein type TssG
T6SS ID (Type) T6SS01300 experimental (Type i4b)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (366 a.a.); Nucleotide sequence (1098 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS13955
Coordinate (Strand) 100227..101324 (+)
NCBI ID 516530522
GenBank LEKY01000012
Uniprot ID A0A095FMF8_BURGA
KEGG ID bgo:BM43_1802
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2e-94 19..345
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-365 MQTAQRRIDPGVVEQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRVLFRNSLSLGFPPSEIERAQSFDAAGERVDEEAHRAAVEDEQVDRVEIVPAFFGLLGGQGALPHHYTEQIIAREQLKRDHAARAFFDVFSNRATALFYSAWKKYRLPLHYELDRDERYLPLLLSLAGVSNPDARRAMQEGKGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVSIRVDQFVGKWYDVPPDQLSVLGEVNATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDRAIALERMLTLLAGITLEYEISLVLKRAEVGPTILGSGGRLGWDAFLCTHEAERDRADARYELHVIH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9823 - -


  Protein sequence: 366 a.a.    

>T6CP016230 LEKY01000012:100227-101324 [Burkholderia gladioli] [TssG]
MQTAQRRIDPGVVEQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRVLFRNSLSLGFPPSEIERAQSFDA
AGERVDEEAHRAAVEDEQVDRVEIVPAFFGLLGGQGALPHHYTEQIIAREQLKRDHAARAFFDVFSNRATALFYSAWKKY
RLPLHYELDRDERYLPLLLSLAGVSNPDARRAMQEGKGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVSIRVDQFV
GKWYDVPPDQLSVLGEVNATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDRAIALERMLTLLAGITLEYEIS
LVLKRAEVGPTILGSGGRLGWDAFLCTHEAERDRADARYELHVIH*

  Nucleotide sequence: 1098 bp    

>T6CP016230 LEKY01000012:100227-101324 [Burkholderia gladioli] [TssG]
ATGCAAACCGCGCAGCGGCGAATCGATCCTGGCGTAGTCGAGCAGTTCCTCGACGAGCCGTATCGCTTCGAGTTCTTCCA
GGCGGTGCGGCTGCTCGAAACCTGGTTCGCCCGGCGCGATCCGGAGAAGCCCGACGCGCTGCGCCCCGGCGAGATCGTCG
AGCGGCGGGTGCTGTTCCGCAACTCGCTGTCGCTCGGTTTCCCGCCCAGCGAGATCGAGCGCGCGCAGTCCTTCGACGCG
GCCGGCGAGCGGGTGGACGAGGAGGCGCATCGCGCCGCCGTCGAGGACGAGCAGGTCGACCGCGTCGAGATCGTGCCGGC
CTTCTTCGGGCTGCTGGGCGGGCAGGGCGCGCTGCCGCATCACTACACCGAGCAGATCATCGCGCGCGAGCAGTTGAAGC
GCGACCACGCCGCGCGCGCCTTCTTCGACGTGTTCTCGAACCGCGCCACCGCGCTGTTCTATTCGGCCTGGAAGAAGTAC
CGCCTGCCGCTGCATTACGAGCTCGACCGCGACGAGCGCTACCTGCCGCTGCTGCTGTCGCTGGCCGGCGTGTCGAATCC
CGACGCGCGGCGCGCCATGCAGGAAGGCAAGGGCGCGGTGATCGACGAGGCCATCGCCGGTTACGCGCTGGCCGCGCGCC
ATCGGCCGGTGTCGGCCGCCTACCTGCAGCGCACCCTGTCCGATTATTTCCAGGTGTCGATCCGCGTCGACCAGTTCGTC
GGCAAGTGGTACGACGTGCCGCCCGACCAGTTGAGCGTGCTGGGCGAGGTCAATGCCACGCTGGGCGCGACCGCGCTGGT
CGGCGAGCGGGTCTGGCAGCGCGACATGCGCGCCCGGCTGGTGGTGGGGCCGCTGTCCAAGCGCGACTACGAGGCCTTCC
TGCCAGGCGGCGATCGCGCCATCGCGCTGGAGCGCATGCTGACGCTGCTGGCCGGCATCACGCTCGAATACGAGATCTCG
CTGGTGCTCAAGCGCGCCGAGGTCGGCCCGACCATCCTCGGCAGCGGCGGGCGGCTCGGCTGGGACGCCTTCCTCTGCAC
CCACGAGGCCGAGCGCGACCGCGCCGATGCGCGCTACGAACTGCATGTGATCCATTGA