Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00161  |
| T6SS type | Type i3 |
| Strain | Azoarcus olearius |
| Replicon (RefSeq) | chromosome (NC_008702) |
| Location | 4242264..4289066 |
| Function | effector translocation |
| Comment | The T6SS mutant appeared to be a better rice root colonizer as compared with the wild type. |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] [2] Shidore T et al (2012) Transcriptomic analysis of responses to exudates reveal genes required for rhizosphere competence of the endophyte Azoarcus sp. strain BH72. Environ Microbiol. 14(10):2775-87. [PudMed:22616609] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | FHA | PAAR | Sfa3 | TagJ | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| AZO_RS19400 | 4238668..4239555 | - | 888 | WP_011767588.1 | transporter | ||
| AZO_RS19405 | 4239989..4240999 | + | 1011 | WP_011767589.1 | thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha | ||
| AZO_RS19410 | 4241016..4242053 | + | 1038 | WP_011767590.1 | alpha-ketoacid dehydrogenase subunit beta | ||
| AZO_RS19415 | 4242264..4242509 | + | 246 | WP_011767591.1 | lipoyl domain-containing protein | ||
| AZO_RS19420 | 4242513..4243226 | + | 714 | WP_011767592.1 | 2-oxo acid dehydrogenase subunit E2 | ||
| AZO_RS19425 | 4243226..4243996 | + | 771 | WP_011767593.1 | lipoate--protein ligase | ||
| AZO_RS19430 | 4244089..4244643 | + | 555 | WP_041644109.1 | twin-arginine translocation signal domain-containing protein | ||
| AZO_RS19435 | 4244733..4246307 | + | 1575 | WP_011767595.1 | GMC family oxidoreductase | ||
| AZO_RS19440 | 4246369..4246983 | + | 615 | WP_011767596.1 | VOC family protein | ||
| T6CP012464 | Sfa3 | AZO_RS19445 | 4247215..4249182 | + | 1968 | WP_011767597.1 | sigma-54-dependent Fis family transcriptional regulator |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF00205 | AZO_RS19555 | - | - | Azoarcus olearius | chromosome (NC_008702) | 4275148..4275636 (+) | 119900186 |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||