Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00161  |
| T6SS type | Type i3 |
| Strain | Azoarcus olearius |
| Replicon (RefSeq) | chromosome (NC_008702) |
| Location | 4242264..4289066 |
| Function | effector translocation |
| Comment | The T6SS mutant appeared to be a better rice root colonizer as compared with the wild type. |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] [2] Shidore T et al (2012) Transcriptomic analysis of responses to exudates reveal genes required for rhizosphere competence of the endophyte Azoarcus sp. strain BH72. Environ Microbiol. 14(10):2775-87. [PudMed:22616609] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | FHA | PAAR | Sfa3 | TagJ | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| AZO_RS19400 | 4238668..4239555 | - | 888 | WP_011767588.1 | transporter | ||
| AZO_RS19405 | 4239989..4240999 | + | 1011 | WP_011767589.1 | thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha | ||
| AZO_RS19410 | 4241016..4242053 | + | 1038 | WP_011767590.1 | alpha-ketoacid dehydrogenase subunit beta | ||
| AZO_RS19415 | 4242264..4242509 | + | 246 | WP_011767591.1 | lipoyl domain-containing protein | ||
| AZO_RS19420 | 4242513..4243226 | + | 714 | WP_011767592.1 | 2-oxo acid dehydrogenase subunit E2 | ||
| AZO_RS19425 | 4243226..4243996 | + | 771 | WP_011767593.1 | lipoate--protein ligase | ||
| AZO_RS19430 | 4244089..4244643 | + | 555 | WP_041644109.1 | twin-arginine translocation signal domain-containing protein | ||
| AZO_RS19435 | 4244733..4246307 | + | 1575 | WP_011767595.1 | GMC family oxidoreductase | ||
| AZO_RS19440 | 4246369..4246983 | + | 615 | WP_011767596.1 | VOC family protein | ||
| T6CP012464 | Sfa3 | AZO_RS19445 | 4247215..4249182 | + | 1968 | WP_011767597.1 | sigma-54-dependent Fis family transcriptional regulator |
| T6CP001572 | TssI | AZO_RS19450 (tssI) | 4249321..4251393 | + | 2073 | WP_011767598.1 | type VI secretion system tip protein VgrG |
| AZO_RS19455 | 4251398..4252432 | + | 1035 | WP_011767599.1 | DUF2169 domain-containing protein | ||
| AZO_RS20965 | 4252437..4253474 | + | 1038 | WP_011767600.1 | hypothetical protein | ||
| AZO_RS19465 | 4253497..4254504 | + | 1008 | WP_011767601.1 | AHH domain-containing protein | ||
| AZO_RS20360 | 4254527..4255069 | + | 543 | WP_011767602.1 | hypothetical protein | ||
| T6CP011383 | PAAR | AZO_RS19475 | 4255159..4255536 | + | 378 | WP_011767603.1 | DUF4150 domain-containing protein |
| AZO_RS19480 | 4255546..4255974 | + | 429 | WP_011767604.1 | hypothetical protein | ||
| AZO_RS19485 | 4255979..4257190 | + | 1212 | WP_011767605.1 | hypothetical protein | ||
| T6CP011384 | FHA | AZO_RS19490 (tagH) | 4257210..4259045 | + | 1836 | WP_011767606.1 | type VI secretion system-associated FHA domain protein TagH |
| AZO_RS19495 | 4259097..4259867 | + | 771 | WP_011767607.1 | protein phosphatase 2C domain-containing protein | ||
| AZO_RS19500 | 4260004..4260594 | + | 591 | WP_041644116.1 | hypothetical protein | ||
| AZO_RS19505 | 4260635..4261894 | + | 1260 | WP_011767609.1 | hypothetical protein | ||
| AZO_RS19510 | 4261940..4263946 | - | 2007 | WP_011767610.1 | protein kinase | ||
| AZO_RS19515 (tagF) | 4264005..4264712 | - | 708 | WP_158309414.1 | type VI secretion system-associated protein TagF | ||
| T6CP001573 | TssM | AZO_RS19520 (tssM) | 4264709..4268281 | - | 3573 | WP_011767612.1 | type VI secretion system membrane subunit TssM |
| T6CP001574 | TssL | AZO_RS19525 | 4268313..4269617 | - | 1305 | WP_011767613.1 | DotU family type VI secretion system protein |
| T6CP001575 | TssK | AZO_RS19530 (tssK) | 4269682..4271016 | - | 1335 | WP_011767614.1 | type VI secretion system baseplate subunit TssK |
| T6CP001576 | TssJ | AZO_RS19535 (tssJ) | 4271065..4271583 | - | 519 | WP_011767615.1 | type VI secretion system lipoprotein TssJ |
| T6CP001577 | TssA | AZO_RS19540 (tssA) | 4271852..4272913 | + | 1062 | WP_011767616.1 | type VI secretion system protein TssA |
| T6CP001578 | TssB | AZO_RS19545 (tssB) | 4272962..4273471 | + | 510 | WP_011767617.1 | type VI secretion system contractile sheath small subunit |
| T6CP001579 | TssC | AZO_RS19550 (tssC) | 4273523..4275019 | + | 1497 | WP_011767618.1 | type VI secretion system contractile sheath large subunit |
| T6CP001580 | TssD | AZO_RS19555 | 4275148..4275636 | + | 489 | WP_011767619.1 | type VI secretion system tube protein Hcp |
| T6CP001581 | TssD | AZO_RS19560 | 4275831..4276337 | + | 507 | WP_011767620.1 | type VI secretion system tube protein Hcp |
| T6CP012734 | TagJ | AZO_RS19565 | 4276353..4277174 | + | 822 | WP_011767621.1 | tetratricopeptide repeat protein |
| T6CP001582 | TssE | AZO_RS19570 (tssE) | 4277194..4277676 | + | 483 | WP_198407936.1 | type VI secretion system baseplate subunit TssE |
| T6CP001583 | TssF | AZO_RS19575 (tssF) | 4277775..4279646 | + | 1872 | WP_011767623.1 | type VI secretion system baseplate subunit TssF |
| T6CP001584 | TssG | AZO_RS19580 (tssG) | 4279622..4280665 | + | 1044 | WP_011767624.1 | type VI secretion system baseplate subunit TssG |
| T6CP001585 | TssH | AZO_RS19585 (tssH) | 4280714..4283434 | + | 2721 | WP_011767625.1 | type VI secretion system ATPase TssH |
| AZO_RS19590 | 4283535..4283924 | + | 390 | WP_011767626.1 | hypothetical protein | ||
| AZO_RS19595 | 4283936..4285093 | + | 1158 | WP_011767627.1 | lipase family protein | ||
| AZO_RS19600 | 4285131..4286267 | + | 1137 | WP_011767628.1 | hypothetical protein | ||
| AZO_RS19605 | 4286286..4287635 | + | 1350 | WP_011767629.1 | tetratricopeptide repeat protein | ||
| AZO_RS19610 | 4287636..4289066 | - | 1431 | WP_011767630.1 | serine/threonine protein kinase | ||
| AZO_RS19615 | 4289077..4289949 | - | 873 | WP_011767631.1 | DUF3365 domain-containing protein | ||
| AZO_RS19620 | 4290002..4290871 | - | 870 | WP_041642904.1 | FecR domain-containing protein | ||
| AZO_RS19625 | 4291053..4292258 | + | 1206 | WP_011767633.1 | beta-ketoacyl-[acyl-carrier-protein] synthase family protein | ||
| AZO_RS19630 | 4292263..4293090 | + | 828 | WP_011767634.1 | beta-ketoacyl synthase chain length factor | ||
| AZO_RS19635 | 4293195..4293596 | + | 402 | WP_198407937.1 | 3-hydroxylacyl-ACP dehydratase |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF00205 |
AZO_RS19555 | - | - | Azoarcus olearius | chromosome (NC_008702) | 4275148..4275636 (+) | 119900186 |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|