Detailed information of effector
Summary
| Effector ID | EFF00205  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00161 (Type i3) |
| Strain | Azoarcus olearius |
| Replicon | chromosome |
| Sequence | Protein sequence (163 a.a.); Nucleotide sequence (489 bp) |
| Description | hcp |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | AZO_RS19555 |
| Coordinates (Strand) | 4275148..4275636 (+) |
| NCBI ID | 119900186 |
| RefSeq | NC_008702 |
| Uniprot ID | UPI0000EAF9E9 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 7.6e-41 | 6..135 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-162 | MAVDMFIKIGDIKGESVDKVHADKIDVLAWSWGMSQSGTTHMGSGGGSGKVSVQDISFTKYVDASSHALIMACCNGKHYDEAVLIVRKAGEKPLEYIKVTMKEVIVTSVSTGGSGGEDRLTENVTLNFAEFKYEYTKQAPKGGKDSTMTATWNIAENDGNVG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9671 | - | - |
Protein sequence: 163 a.a. .
>EFF00205 NC_008702:4275148-4275636 (Unknown) [Azoarcus olearius]
MAVDMFIKIGDIKGESVDKVHADKIDVLAWSWGMSQSGTTHMGSGGGSGKVSVQDISFTKYVDASSHALIMACCNGKHYD
EAVLIVRKAGEKPLEYIKVTMKEVIVTSVSTGGSGGEDRLTENVTLNFAEFKYEYTKQAPKGGKDSTMTATWNIAENDGN
VG*
MAVDMFIKIGDIKGESVDKVHADKIDVLAWSWGMSQSGTTHMGSGGGSGKVSVQDISFTKYVDASSHALIMACCNGKHYD
EAVLIVRKAGEKPLEYIKVTMKEVIVTSVSTGGSGGEDRLTENVTLNFAEFKYEYTKQAPKGGKDSTMTATWNIAENDGN
VG*
Nucleotide sequence: 489 bp .
>EFF00205 NC_008702:4275148-4275636 (Unknown) [Azoarcus olearius]
ATGGCAGTTGATATGTTCATCAAGATCGGCGACATCAAGGGTGAGTCGGTCGACAAGGTGCACGCCGACAAGATCGACGT
GCTCGCCTGGAGCTGGGGCATGAGCCAGTCCGGCACCACCCACATGGGCAGCGGCGGCGGCTCCGGCAAGGTCAGCGTGC
AGGACATCTCCTTCACCAAGTACGTGGACGCCTCCAGCCACGCGCTGATCATGGCCTGCTGCAACGGCAAGCACTACGAC
GAAGCCGTGCTGATCGTGCGCAAGGCCGGCGAGAAACCGCTCGAGTACATCAAGGTCACGATGAAGGAAGTCATCGTCAC
CTCCGTCAGCACCGGCGGCAGCGGTGGTGAGGATCGCCTGACCGAGAACGTCACGCTGAACTTCGCCGAGTTCAAGTACG
AGTACACCAAGCAGGCGCCGAAGGGTGGCAAGGACAGCACCATGACCGCGACCTGGAACATCGCCGAAAACGACGGCAAC
GTCGGCTGA
ATGGCAGTTGATATGTTCATCAAGATCGGCGACATCAAGGGTGAGTCGGTCGACAAGGTGCACGCCGACAAGATCGACGT
GCTCGCCTGGAGCTGGGGCATGAGCCAGTCCGGCACCACCCACATGGGCAGCGGCGGCGGCTCCGGCAAGGTCAGCGTGC
AGGACATCTCCTTCACCAAGTACGTGGACGCCTCCAGCCACGCGCTGATCATGGCCTGCTGCAACGGCAAGCACTACGAC
GAAGCCGTGCTGATCGTGCGCAAGGCCGGCGAGAAACCGCTCGAGTACATCAAGGTCACGATGAAGGAAGTCATCGTCAC
CTCCGTCAGCACCGGCGGCAGCGGTGGTGAGGATCGCCTGACCGAGAACGTCACGCTGAACTTCGCCGAGTTCAAGTACG
AGTACACCAAGCAGGCGCCGAAGGGTGGCAAGGACAGCACCATGACCGCGACCTGGAACATCGCCGAAAACGACGGCAAC
GTCGGCTGA