Detailed information of component protein


Summary

Component ID T6CP001573
Component protein type TssM
T6SS ID (Type) T6SS00161 experimental (Type i3)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (1191 a.a.); Nucleotide sequence (3573 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AZO_RS19520
Coordinate (Strand) 4264709..4268281 (-)
NCBI ID WP_011767612.1
RefSeq NC_008702
Uniprot ID A1KCF0_AZOSB
KEGG ID azo:azo3890, aoa:dqs_4034
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 4.9e-91 517..824
IcmF-related_N PF14331.8 3.6e-90 209..465
IcmF_C PF06744.14 2.2e-27 1067..1171
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MKAVFK
Transmembrane helix 7-29 FLFHPVLLGILGLIALALVIWFV
Outside 30-43 GPLIAVAGWAPLES
Transmembrane helix 44-63 ALARLILIGLVVAFVVFRLV
Inside 64-456 WRKIKAKKQNAQLVEGLVKADDAGADKAATPDEVETLRKRFEEALRVLKDSQAAAHARQGGVARLLSAGSGRYLYELPWYVFIGAPGSGKTTALINSGLHFPLAEKLGIHQLKGVGGTRNCDWWFTDDAVLIDTAGRYTTQDSDQASDRGAWQGFLGLLKRHRPRQPLNGVLLTVSLGDLLAQDADGAERHAAALRARVQELYEQLNVRLPIYVLVTKADLIAGFNEFFNDFGKEARDQVWGVTFPQQGDSAAALQALPGELGRLRERVLDLLPVRLRDERDLARRGAIAAFDQQLAAANRLLGAFLGKVFAPSGFDHALMLRGVYFTSGTQEGSPIDRVMSSLGSAFGLERRVIPPQSGSGKSFFITRLLREVVFAEQRIGGTNLKWERRRG
Transmembrane helix 457-479 LVRLATFAGIGVLTVGLALAWAL
Outside 480-1190 SYHNNDAYIDAVGERVKTVQPVVADARVAASDDVVGILPVLDAVRTVSHTDLRPQGEAPLSMRFGLYQGDKLDAAAEQAYRGMLRDVLLPRIAMRVEKQLRNLDPNNLEFAYEALKSYIMLHDATHFDAESIKAWISLDWELNLPRDTTAEQRAALAGYLDALFKDGAVVSPVAADAELIARVRNQLLRYTLPDRIYSRLKRQGVGSEFPEFTVEKAVGPSASLVFVRKSGQPLTRGVPGLYSFDGYHKGFDPQVERVSAHLAEEEPWVLGTASAKPDAAGAKQVADEVRRLYLTDYARVWEAYIDDIAVQRAGSLQQSIQVARVLSAADSPLPKLMKAMSRETTLIVATEDKSVIDKAQQRVAEARSELGRMIFGANQPGQGAAAGAGIERIVDDRFVALRQLVTGDGNTAPINAVVTLLNDVYVNLSATETALRDKVAPPPSDATARVKAESARMPEPVRSMLQQLSAAGTGQALSSLRESLSTAVATQVGQFCGQATDGRYPFVRSSARDVTRDDFAALFGPGGKFDSFFNQQLAQYVDVGTSPWSFRKVQEQSLGAPGNLVQFQRASVIRDVFFRSGGNLRLDFKPIEMDPAITHFTLDVDGQLVNYAHGPQVPQSVQWPGPKGGLQVRVQITPPGQSGTSGIATDGPWALFRMLDKANITPTSLPEKFRATFVVDGRSAVFEVTTNSVQNPFRLRELVDFRCPSGL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9933 - -


  Protein sequence: 1191 a.a.    

>T6CP001573 NC_008702:c4268281-4264709 [Azoarcus olearius] [TssM]
MKAVFKFLFHPVLLGILGLIALALVIWFVGPLIAVAGWAPLESALARLILIGLVVAFVVFRLVWRKIKAKKQNAQLVEGL
VKADDAGADKAATPDEVETLRKRFEEALRVLKDSQAAAHARQGGVARLLSAGSGRYLYELPWYVFIGAPGSGKTTALINS
GLHFPLAEKLGIHQLKGVGGTRNCDWWFTDDAVLIDTAGRYTTQDSDQASDRGAWQGFLGLLKRHRPRQPLNGVLLTVSL
GDLLAQDADGAERHAAALRARVQELYEQLNVRLPIYVLVTKADLIAGFNEFFNDFGKEARDQVWGVTFPQQGDSAAALQA
LPGELGRLRERVLDLLPVRLRDERDLARRGAIAAFDQQLAAANRLLGAFLGKVFAPSGFDHALMLRGVYFTSGTQEGSPI
DRVMSSLGSAFGLERRVIPPQSGSGKSFFITRLLREVVFAEQRIGGTNLKWERRRGLVRLATFAGIGVLTVGLALAWALS
YHNNDAYIDAVGERVKTVQPVVADARVAASDDVVGILPVLDAVRTVSHTDLRPQGEAPLSMRFGLYQGDKLDAAAEQAYR
GMLRDVLLPRIAMRVEKQLRNLDPNNLEFAYEALKSYIMLHDATHFDAESIKAWISLDWELNLPRDTTAEQRAALAGYLD
ALFKDGAVVSPVAADAELIARVRNQLLRYTLPDRIYSRLKRQGVGSEFPEFTVEKAVGPSASLVFVRKSGQPLTRGVPGL
YSFDGYHKGFDPQVERVSAHLAEEEPWVLGTASAKPDAAGAKQVADEVRRLYLTDYARVWEAYIDDIAVQRAGSLQQSIQ
VARVLSAADSPLPKLMKAMSRETTLIVATEDKSVIDKAQQRVAEARSELGRMIFGANQPGQGAAAGAGIERIVDDRFVAL
RQLVTGDGNTAPINAVVTLLNDVYVNLSATETALRDKVAPPPSDATARVKAESARMPEPVRSMLQQLSAAGTGQALSSLR
ESLSTAVATQVGQFCGQATDGRYPFVRSSARDVTRDDFAALFGPGGKFDSFFNQQLAQYVDVGTSPWSFRKVQEQSLGAP
GNLVQFQRASVIRDVFFRSGGNLRLDFKPIEMDPAITHFTLDVDGQLVNYAHGPQVPQSVQWPGPKGGLQVRVQITPPGQ
SGTSGIATDGPWALFRMLDKANITPTSLPEKFRATFVVDGRSAVFEVTTNSVQNPFRLRELVDFRCPSGL*

  Nucleotide sequence: 3573 bp    

>T6CP001573 NC_008702:c4268281-4264709 [Azoarcus olearius] [TssM]
ATGAAAGCCGTCTTCAAGTTCCTCTTCCACCCGGTGCTGCTCGGCATCCTCGGGCTGATCGCGCTGGCGCTGGTGATCTG
GTTCGTCGGTCCGCTGATCGCGGTCGCCGGCTGGGCGCCGCTGGAGTCCGCGCTGGCGCGGCTGATCCTGATCGGGCTGG
TGGTCGCCTTCGTGGTGTTCCGCCTCGTGTGGCGCAAGATCAAGGCGAAGAAGCAGAACGCCCAGCTCGTCGAAGGTCTG
GTCAAGGCCGACGACGCCGGCGCCGACAAGGCCGCCACGCCCGATGAGGTCGAAACCCTGCGCAAGCGCTTCGAGGAAGC
GCTGCGGGTGTTGAAGGACAGCCAGGCCGCGGCGCACGCCAGGCAGGGCGGCGTTGCCCGCCTGCTGTCGGCCGGGTCCG
GCCGCTATTTGTACGAGCTGCCGTGGTACGTCTTCATCGGCGCGCCGGGCTCGGGCAAGACCACCGCGCTGATCAACTCC
GGCCTGCACTTCCCGCTCGCCGAGAAACTCGGCATCCACCAGTTGAAGGGTGTCGGCGGCACGCGCAACTGCGACTGGTG
GTTCACCGACGACGCGGTGCTGATCGACACCGCCGGCCGCTACACCACCCAGGATTCCGACCAGGCCAGCGACCGCGGCG
CCTGGCAGGGCTTCCTCGGCCTGCTGAAGCGCCATCGCCCGCGCCAGCCGCTCAACGGTGTGCTGCTCACCGTCAGCCTC
GGCGACCTGCTGGCGCAGGATGCCGACGGCGCCGAACGCCATGCCGCCGCGCTGCGCGCCCGCGTGCAGGAGCTGTACGA
GCAGCTCAACGTCCGCCTGCCGATCTACGTGCTGGTCACCAAGGCCGACCTGATCGCCGGCTTCAACGAATTCTTCAACG
ATTTCGGCAAGGAAGCGCGCGACCAGGTGTGGGGCGTCACCTTCCCGCAGCAGGGCGATTCCGCCGCCGCGCTGCAGGCG
CTGCCGGGCGAACTCGGGCGCCTGCGCGAGCGTGTGCTCGACCTGCTGCCGGTGCGCCTGCGCGACGAGCGCGACCTTGC
GCGGCGCGGCGCGATCGCCGCCTTCGACCAGCAGCTCGCGGCCGCCAACCGCCTGCTCGGCGCCTTCCTCGGCAAGGTGT
TCGCCCCGTCCGGTTTCGACCACGCGCTGATGCTACGCGGGGTGTATTTCACCAGCGGCACGCAGGAAGGCAGCCCGATC
GACCGCGTGATGTCCTCGCTCGGTTCCGCCTTCGGCCTCGAACGCCGCGTGATTCCGCCGCAAAGCGGCAGCGGCAAGAG
CTTCTTCATCACCCGCCTGCTGCGCGAAGTGGTGTTTGCCGAGCAGCGCATCGGCGGCACCAACCTGAAGTGGGAACGCC
GCCGCGGTCTGGTGAGGCTGGCGACGTTTGCCGGCATCGGCGTGCTCACCGTCGGGCTCGCGCTCGCCTGGGCCTTGAGC
TATCACAACAACGACGCCTACATCGACGCCGTCGGCGAGCGCGTGAAGACGGTGCAGCCGGTCGTCGCCGACGCCCGCGT
GGCCGCCTCCGACGATGTGGTCGGCATCCTGCCGGTGCTCGACGCGGTGCGCACCGTGTCGCACACCGACCTGCGGCCGC
AGGGCGAGGCGCCGCTGTCGATGCGCTTCGGCCTGTACCAGGGTGACAAGCTCGACGCTGCCGCCGAGCAGGCCTATCGC
GGCATGCTGCGCGACGTGCTGTTGCCGCGGATCGCGATGCGGGTCGAAAAGCAGCTGCGCAACCTCGACCCCAACAATCT
CGAGTTCGCCTACGAGGCGCTGAAGAGCTACATCATGCTGCACGATGCGACGCACTTCGATGCCGAGTCGATCAAGGCCT
GGATCAGCCTCGACTGGGAACTCAACCTGCCGCGCGACACCACCGCCGAGCAGCGTGCGGCGCTCGCCGGCTACCTCGAC
GCCTTGTTCAAGGACGGCGCGGTGGTGTCGCCGGTGGCGGCGGATGCGGAGCTGATCGCGCGGGTGCGCAACCAGCTGCT
GCGCTACACCCTGCCGGACCGCATCTACAGCCGCCTCAAGCGCCAGGGCGTGGGCAGCGAATTCCCCGAATTCACCGTCG
AAAAGGCGGTCGGCCCGTCGGCCTCGCTGGTGTTCGTGCGCAAGAGCGGCCAGCCGCTGACCCGCGGCGTGCCCGGCCTG
TACAGCTTCGACGGCTACCACAAGGGCTTCGACCCGCAGGTCGAGCGCGTCTCCGCCCACCTCGCCGAGGAAGAACCTTG
GGTGCTCGGCACCGCCTCGGCCAAGCCGGACGCCGCCGGCGCCAAGCAGGTGGCGGACGAAGTGCGCCGGCTCTACCTGA
CCGACTACGCCCGCGTGTGGGAAGCCTACATCGACGACATCGCGGTGCAGCGCGCCGGCAGCCTGCAGCAGAGCATCCAG
GTGGCGCGGGTGCTGTCGGCGGCGGATTCGCCGCTGCCCAAGCTGATGAAAGCGATGTCGCGCGAGACCACGCTGATCGT
CGCTACCGAGGACAAGTCGGTGATCGACAAGGCCCAGCAGCGCGTGGCGGAAGCCCGCAGCGAACTCGGCCGCATGATCT
TCGGCGCCAATCAGCCCGGCCAGGGCGCAGCCGCCGGTGCCGGCATCGAGCGCATCGTGGACGACCGCTTCGTGGCGCTG
CGCCAGCTCGTCACCGGCGACGGCAACACCGCGCCGATCAATGCGGTGGTGACGCTGCTCAACGATGTGTACGTCAATCT
GTCGGCCACCGAAACCGCGCTGCGCGACAAGGTGGCGCCGCCGCCGTCGGATGCCACCGCGCGCGTCAAGGCGGAAAGCG
CGCGCATGCCCGAGCCGGTGCGCTCGATGCTGCAGCAGCTCTCCGCCGCCGGCACCGGTCAGGCGCTGAGTTCGCTGCGC
GAATCGCTGTCCACCGCGGTGGCCACCCAGGTCGGCCAGTTCTGCGGTCAGGCCACCGACGGCCGCTATCCCTTCGTGCG
CAGCAGCGCGCGCGATGTCACCCGCGACGATTTCGCCGCGCTGTTCGGCCCCGGCGGCAAGTTCGACAGCTTCTTCAACC
AGCAGCTGGCGCAGTATGTGGATGTCGGCACCTCGCCGTGGAGCTTCCGCAAGGTGCAGGAACAGTCGCTTGGCGCCCCT
GGCAATCTGGTGCAGTTCCAGCGCGCCTCGGTGATCCGCGACGTGTTCTTCCGCAGCGGCGGCAACCTGCGGCTGGACTT
CAAGCCCATCGAGATGGACCCCGCGATCACCCACTTCACGCTCGATGTAGACGGTCAGCTGGTGAACTACGCGCATGGTC
CGCAGGTGCCGCAGTCGGTGCAGTGGCCCGGCCCCAAGGGCGGCCTGCAGGTGCGGGTGCAGATCACGCCGCCGGGCCAG
AGCGGCACCTCCGGCATCGCCACCGACGGCCCCTGGGCGCTGTTCCGCATGCTCGACAAGGCCAACATCACGCCGACTTC
GCTGCCGGAGAAGTTCCGCGCCACCTTCGTGGTGGATGGCCGCTCGGCGGTGTTCGAAGTGACCACCAACAGCGTGCAGA
ACCCCTTCCGCCTGCGCGAGCTGGTGGATTTCCGCTGCCCGTCCGGGCTGTGA