Detailed information of component protein


Summary

Component ID T6CP001573
Component protein type TssM
T6SS ID (Type) T6SS00161 experimental (Type i3)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (1191 a.a.); Nucleotide sequence (3573 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 4264709..4268281 (-)
NCBI ID WP_011767612.1
RefSeq NC_008702
Uniprot ID A1KCF0_AZOSB
KEGG ID azo:azo3890, aoa:dqs_4034
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MKAVFK
Transmembrane helix 7-29 FLFHPVLLGILGLIALALVIWFV
Outside 30-43 GPLIAVAGWAPLES
Transmembrane helix 44-63 ALARLILIGLVVAFVVFRLV
Inside 64-456 WRKIKAKKQNAQLVEGLVKADDAGADKAATPDEVETLRKRFEEALRVLKDSQAAAHARQGGVARLLSAGSGRYLYELPWYVFIGAPGSGKTTALINSGLHFPLAEKLGIHQLKGVGGTRNCDWWFTDDAVLIDTAGRYTTQDSDQASDRGAWQGFLGLLKRHRPRQPLNGVLLTVSLGDLLAQDADGAERHAAALRARVQELYEQLNVRLPIYVLVTKADLIAGFNEFFNDFGKEARDQVWGVTFPQQGDSAAALQALPGELGRLRERVLDLLPVRLRDERDLARRGAIAAFDQQLAAANRLLGAFLGKVFAPSGFDHALMLRGVYFTSGTQEGSPIDRVMSSLGSAFGLERRVIPPQSGSGKSFFITRLLREVVFAEQRIGGTNLKWERRRG
Transmembrane helix 457-479 LVRLATFAGIGVLTVGLALAWAL
Outside 480-1190 SYHNNDAYIDAVGERVKTVQPVVADARVAASDDVVGILPVLDAVRTVSHTDLRPQGEAPLSMRFGLYQGDKLDAAAEQAYRGMLRDVLLPRIAMRVEKQLRNLDPNNLEFAYEALKSYIMLHDATHFDAESIKAWISLDWELNLPRDTTAEQRAALAGYLDALFKDGAVVSPVAADAELIARVRNQLLRYTLPDRIYSRLKRQGVGSEFPEFTVEKAVGPSASLVFVRKSGQPLTRGVPGLYSFDGYHKGFDPQVERVSAHLAEEEPWVLGTASAKPDAAGAKQVADEVRRLYLTDYARVWEAYIDDIAVQRAGSLQQSIQVARVLSAADSPLPKLMKAMSRETTLIVATEDKSVIDKAQQRVAEARSELGRMIFGANQPGQGAAAGAGIERIVDDRFVALRQLVTGDGNTAPINAVVTLLNDVYVNLSATETALRDKVAPPPSDATARVKAESARMPEPVRSMLQQLSAAGTGQALSSLRESLSTAVATQVGQFCGQATDGRYPFVRSSARDVTRDDFAALFGPGGKFDSFFNQQLAQYVDVGTSPWSFRKVQEQSLGAPGNLVQFQRASVIRDVFFRSGGNLRLDFKPIEMDPAITHFTLDVDGQLVNYAHGPQVPQSVQWPGPKGGLQVRVQITPPGQSGTSGIATDGPWALFRMLDKANITPTSLPEKFRATFVVDGRSAVFEVTTNSVQNPFRLRELVDFRCPSGL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9933 - -


  Protein sequence: 1191 a.a.    


  Nucleotide sequence: 3573 bp