Detailed information of component protein


Summary

Component ID T6CP012464
Component protein type Sfa3
T6SS ID (Type) T6SS00161 experimental (Type i3)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (656 a.a.); Nucleotide sequence (1968 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AZO_RS19445
Coordinate (Strand) 4247215..4249182 (+)
NCBI ID WP_011767597.1
RefSeq NC_008702
Uniprot ID A1KCD5_AZOSB
KEGG ID azo:azo3875
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Sigma54_activat PF00158.28 1.3e-63 333..495
HTH_8 PF02954.21 5.9e-09 614..646
GAF PF01590.28 2.9e-06 71..203
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-655 MLAQSQREHIDHVLAVSQAGEPATDPIHRSWVRCVNDYGLDPSRPTRAHIVEQARLREHQDQIEDFLGVARTGMEQLYKRMAGIGYVLLLTDAHGIAVDFIGNDAWARELKHSGLYLGADWSETRAGTCAVGTCIVDKAPITCHHTDHFDASHITLTCNAAPLFDPTGGFLGVLDVSALTSPSPRDSQHLALHMVTMYAQMVEDASFLRYFRDRWVLRLGSAWSMVDVSGEIMLAFDADGLIVGANSGARRALRPLDGVTDTLIGRPLGEVFREGMDAIWRIARAGFSADRTALSTSGGEVYYGAVLQPRVAPLRPAPAVAATPAAPALERLAGNDPQMQRLIAQASRLVNRPVNILVHGETGTGKEVLAKALHESSSRATKPFVAVNCAAIPESLIESELFGYTAGTFTGGRSKGMRGLIQQADGGTLFLDEIGDMPLHLQTRLLRVLAEREVLPLGAEKPVPVNLTVVAASHRDLRKLIAEGSFREDLYYRLCGAILYLPPLRERRDRDYLIDRLLAAEGAELGTSAALDPAARGLLLGYDWPGNVRQLRNVLRFALAVCDGEHILPQDLPAELMASAPQAPSRTPAIATATAAVTAPAAVTTPGADPVRGELEAALRRHHWNITAAAAELGVCRATIYRQMKRHGIVPPHLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9753 - -


  Protein sequence: 656 a.a.    

>T6CP012464 NC_008702:4247215-4249182 [Azoarcus olearius] [Sfa3]
MLAQSQREHIDHVLAVSQAGEPATDPIHRSWVRCVNDYGLDPSRPTRAHIVEQARLREHQDQIEDFLGVARTGMEQLYKR
MAGIGYVLLLTDAHGIAVDFIGNDAWARELKHSGLYLGADWSETRAGTCAVGTCIVDKAPITCHHTDHFDASHITLTCNA
APLFDPTGGFLGVLDVSALTSPSPRDSQHLALHMVTMYAQMVEDASFLRYFRDRWVLRLGSAWSMVDVSGEIMLAFDADG
LIVGANSGARRALRPLDGVTDTLIGRPLGEVFREGMDAIWRIARAGFSADRTALSTSGGEVYYGAVLQPRVAPLRPAPAV
AATPAAPALERLAGNDPQMQRLIAQASRLVNRPVNILVHGETGTGKEVLAKALHESSSRATKPFVAVNCAAIPESLIESE
LFGYTAGTFTGGRSKGMRGLIQQADGGTLFLDEIGDMPLHLQTRLLRVLAEREVLPLGAEKPVPVNLTVVAASHRDLRKL
IAEGSFREDLYYRLCGAILYLPPLRERRDRDYLIDRLLAAEGAELGTSAALDPAARGLLLGYDWPGNVRQLRNVLRFALA
VCDGEHILPQDLPAELMASAPQAPSRTPAIATATAAVTAPAAVTTPGADPVRGELEAALRRHHWNITAAAAELGVCRATI
YRQMKRHGIVPPHLL*

  Nucleotide sequence: 1968 bp    

>T6CP012464 NC_008702:4247215-4249182 [Azoarcus olearius] [Sfa3]
ATGCTGGCGCAATCCCAGCGCGAACACATCGACCATGTGCTCGCCGTATCACAGGCGGGCGAACCCGCCACCGACCCGAT
CCACCGCTCGTGGGTCCGCTGTGTGAACGACTACGGCCTCGACCCGAGCCGGCCGACCCGCGCGCATATCGTCGAACAGG
CCCGCCTGCGCGAGCACCAGGACCAGATCGAGGACTTCCTCGGCGTCGCCCGCACCGGCATGGAGCAGCTCTACAAGCGC
ATGGCCGGCATCGGCTACGTGCTGCTGCTGACCGACGCCCACGGCATCGCGGTGGACTTCATCGGCAACGACGCCTGGGC
GCGCGAGCTGAAGCACTCCGGCCTCTATCTCGGCGCCGACTGGAGCGAAACCCGTGCCGGCACCTGTGCGGTGGGCACCT
GCATCGTCGACAAGGCGCCGATCACCTGTCACCACACCGATCACTTCGACGCGTCGCACATCACGCTGACCTGTAATGCC
GCGCCGCTGTTCGACCCCACCGGCGGCTTCCTCGGCGTGCTCGACGTCTCGGCGCTGACCTCGCCGTCGCCGCGCGACAG
CCAGCATCTGGCGCTGCACATGGTGACGATGTATGCGCAGATGGTGGAGGACGCCAGCTTCCTGCGCTATTTCCGCGACC
GCTGGGTGCTGCGGCTGGGCTCGGCGTGGTCGATGGTCGATGTGTCGGGCGAGATCATGCTCGCCTTCGATGCCGATGGC
CTCATCGTCGGCGCCAACAGCGGCGCCCGGCGCGCACTGCGCCCGCTCGACGGCGTCACCGACACCCTGATCGGGCGCCC
GCTCGGCGAGGTTTTCCGCGAGGGCATGGACGCGATCTGGCGCATCGCCCGCGCCGGTTTTTCCGCCGACCGCACCGCGC
TGTCCACCAGCGGCGGCGAGGTCTATTACGGTGCCGTGCTGCAACCGCGCGTGGCCCCGCTGCGCCCGGCGCCCGCCGTC
GCCGCCACCCCGGCGGCGCCCGCGCTGGAGCGCCTCGCCGGCAACGACCCGCAGATGCAGCGCCTGATCGCACAGGCGTC
GCGGCTGGTGAACCGGCCGGTGAACATCCTGGTGCACGGCGAAACCGGCACCGGCAAGGAAGTGCTGGCGAAAGCGCTGC
ACGAATCCAGCAGCCGCGCCACCAAGCCCTTCGTCGCGGTCAATTGCGCGGCGATCCCGGAATCGCTGATCGAGAGCGAA
CTGTTCGGCTACACCGCCGGCACCTTCACCGGCGGGCGCAGCAAGGGCATGCGCGGGCTGATCCAGCAGGCCGACGGCGG
CACGCTGTTCCTCGACGAGATCGGCGACATGCCGCTGCACCTGCAGACCCGGCTGCTGCGCGTGCTGGCCGAGCGCGAGG
TGCTGCCGCTGGGCGCCGAGAAGCCGGTGCCGGTGAATCTCACCGTGGTCGCCGCCTCGCACCGCGACCTGCGCAAGCTG
ATCGCCGAAGGCAGCTTCCGCGAGGATCTCTACTACCGCCTGTGCGGCGCCATCCTGTACCTGCCGCCGCTGCGCGAACG
GCGCGACCGCGACTACCTGATCGACCGCCTGCTCGCGGCCGAAGGCGCGGAACTGGGCACCAGCGCCGCGCTGGACCCGG
CCGCGCGCGGCCTGCTGCTGGGCTACGACTGGCCCGGCAACGTGCGCCAGCTGCGCAATGTGCTGCGCTTCGCGCTGGCG
GTGTGCGATGGCGAGCACATCCTGCCGCAGGACCTGCCCGCCGAACTGATGGCGAGCGCACCGCAAGCGCCGTCACGCAC
GCCCGCCATCGCGACCGCGACCGCGGCCGTCACTGCGCCCGCGGCGGTCACCACGCCGGGCGCCGACCCGGTGCGCGGCG
AACTGGAGGCCGCGCTGCGCCGTCATCACTGGAACATCACCGCCGCCGCGGCCGAACTCGGCGTCTGCCGCGCGACCATC
TACCGGCAGATGAAACGCCACGGCATCGTGCCGCCCCATCTGCTGTAG