Detailed information of component protein


Summary

Component ID T6CP001585
Component protein type TssH
T6SS ID (Type) T6SS00161 experimental (Type i3)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (907 a.a.); Nucleotide sequence (2721 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AZO_RS19585
Coordinate (Strand) 4280714..4283434 (+)
NCBI ID WP_011767625.1
RefSeq NC_008702
Uniprot ID A1KCG3_AZOSB
KEGG ID aoa:dqs_4047, azo:azo3903
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 8e-37 638..804
AAA_lid_9 PF17871.3 1e-28 372..463
ClpB_D2-small PF10431.11 3.7e-11 811..887
AAA PF00004.31 3.5e-08 232..343
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-906 MSEISRVASFGKLNSLAYKAMEGATVFCKLRGNPYVELEHWLQQLLQNEDTDLHRIVRHFDVDAARLAADMTTALDRLPRGSTSISGLSENLDTLVERGWVYASLMFGDRQIRSGYLLVGMLKTPSLRNALMAISRQFERVRPDVLTDEFTKIVAGSAEENLTARDGSGGAPGEDSGAIAPAQMGKQEALKKFTVDLTEQARSGKMDPIVGRDEEIRQVVDILMRRRQNNPILVGEAGVGKTAVVEGFAQRIARGDVPPALKDVSLLALDVGLLQAGASMKGEFEQRLRSVIDEVQASPKPIILFVDETHTLVGAGGAAGTGDAANLLKPALARGTLRTVGATTWAEYKKYIEKDPALTRRFQNVQVDEPDEKKAVLMMRGVASTMEKHHQVQILDEALEAAVKLSHRYIPARQLPDKSVSLLDTACARVAVSLHATPAEVDDSRKRIDALNTELEIIGRESNIGIEVGERRAHAEALLAEEQQRLAELEARWAAEKTLVDELLALRAKLRSGSRPVEGTGSALEAAAEAAAPEAAAESAPEPEREALFARLREVQAELATLQGEDPLILPTVDYQAVASVVADWTGIPVGRMARNEIENVLRLPQLLGQRVIGQDHAMEMIAKRIQTSRAGLDNPNKPIGVFMLAGTSGVGKTETALALAEALYGGEQNVVTINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEMFFQVFDKGFMEDGEGRFIDFKNTLILLTTNAGTDLIASMCKDPDLLPDPEGLAKALRDPLLKIFPPALLGRLVTIPYYPLTDAMLGAIVRLQLGRIKKRVEARYKIPFEYGDDVVELVVSRCTESESGGRMIDAILTNTMLPDISREFLNRTMEGKPIVRVAMGVANADFTYNFD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9943 - -


  Protein sequence: 907 a.a.    

>T6CP001585 NC_008702:4280714-4283434 [Azoarcus olearius] [TssH]
MSEISRVASFGKLNSLAYKAMEGATVFCKLRGNPYVELEHWLQQLLQNEDTDLHRIVRHFDVDAARLAADMTTALDRLPR
GSTSISGLSENLDTLVERGWVYASLMFGDRQIRSGYLLVGMLKTPSLRNALMAISRQFERVRPDVLTDEFTKIVAGSAEE
NLTARDGSGGAPGEDSGAIAPAQMGKQEALKKFTVDLTEQARSGKMDPIVGRDEEIRQVVDILMRRRQNNPILVGEAGVG
KTAVVEGFAQRIARGDVPPALKDVSLLALDVGLLQAGASMKGEFEQRLRSVIDEVQASPKPIILFVDETHTLVGAGGAAG
TGDAANLLKPALARGTLRTVGATTWAEYKKYIEKDPALTRRFQNVQVDEPDEKKAVLMMRGVASTMEKHHQVQILDEALE
AAVKLSHRYIPARQLPDKSVSLLDTACARVAVSLHATPAEVDDSRKRIDALNTELEIIGRESNIGIEVGERRAHAEALLA
EEQQRLAELEARWAAEKTLVDELLALRAKLRSGSRPVEGTGSALEAAAEAAAPEAAAESAPEPEREALFARLREVQAELA
TLQGEDPLILPTVDYQAVASVVADWTGIPVGRMARNEIENVLRLPQLLGQRVIGQDHAMEMIAKRIQTSRAGLDNPNKPI
GVFMLAGTSGVGKTETALALAEALYGGEQNVVTINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRKPYSVVLLDE
VEKAHPDVHEMFFQVFDKGFMEDGEGRFIDFKNTLILLTTNAGTDLIASMCKDPDLLPDPEGLAKALRDPLLKIFPPALL
GRLVTIPYYPLTDAMLGAIVRLQLGRIKKRVEARYKIPFEYGDDVVELVVSRCTESESGGRMIDAILTNTMLPDISREFL
NRTMEGKPIVRVAMGVANADFTYNFD*

  Nucleotide sequence: 2721 bp    

>T6CP001585 NC_008702:4280714-4283434 [Azoarcus olearius] [TssH]
ATGAGCGAAATCAGTCGGGTAGCCTCGTTCGGCAAACTCAACAGCCTCGCCTACAAGGCGATGGAAGGCGCCACCGTCTT
CTGCAAGCTGCGCGGCAATCCCTATGTGGAGCTGGAACACTGGCTGCAGCAGCTGCTGCAGAACGAGGACACCGACCTGC
ACCGCATCGTGCGCCACTTCGACGTGGACGCGGCGCGCCTGGCCGCCGACATGACCACCGCGCTCGACCGCCTGCCGCGC
GGCTCGACCTCGATCTCGGGCCTCTCCGAAAACCTCGACACGCTCGTCGAACGCGGCTGGGTGTATGCCTCTCTGATGTT
CGGCGACCGCCAGATCCGCTCCGGCTACCTGCTGGTCGGCATGCTCAAGACGCCCTCGCTGCGCAACGCGCTGATGGCGA
TCTCGCGCCAGTTCGAGCGCGTGCGCCCCGATGTGCTGACCGACGAATTCACCAAGATCGTCGCCGGCTCGGCGGAAGAA
AACCTCACCGCGCGCGATGGCTCGGGCGGCGCGCCGGGCGAGGACAGCGGCGCGATTGCGCCCGCGCAGATGGGCAAGCA
GGAGGCGCTGAAGAAATTCACCGTCGACCTCACCGAGCAGGCCCGCTCCGGCAAGATGGACCCGATCGTCGGCCGCGACG
AAGAAATCCGCCAGGTGGTCGACATCCTGATGCGCCGCCGCCAGAACAACCCCATCCTGGTCGGCGAGGCCGGCGTCGGC
AAGACCGCGGTGGTCGAAGGCTTCGCCCAGCGCATCGCGCGCGGCGACGTGCCGCCGGCGCTCAAGGACGTCTCGCTGCT
GGCGCTGGATGTCGGCCTGCTGCAGGCCGGCGCCAGCATGAAGGGCGAATTCGAGCAGCGACTGCGCTCGGTCATCGACG
AAGTCCAGGCCAGCCCCAAGCCCATCATCCTGTTCGTCGATGAGACCCACACCCTGGTCGGCGCCGGCGGCGCGGCCGGC
ACCGGCGATGCGGCCAACCTGCTCAAGCCGGCGCTCGCGCGCGGCACGCTGCGCACCGTCGGCGCCACCACCTGGGCCGA
GTACAAGAAGTACATCGAGAAGGACCCGGCGCTGACCCGGCGCTTCCAGAACGTGCAGGTCGACGAGCCGGACGAGAAGA
AGGCGGTGCTCATGATGCGCGGCGTTGCCAGCACCATGGAGAAGCACCACCAGGTGCAGATCCTCGACGAGGCGCTGGAG
GCCGCGGTCAAGCTGTCGCACCGCTACATCCCGGCGCGCCAGCTGCCGGACAAGTCCGTCTCGCTGCTCGACACCGCCTG
CGCCCGCGTCGCGGTGAGCCTGCACGCCACCCCGGCCGAGGTGGACGACAGCCGCAAGCGCATCGACGCGCTGAACACCG
AGCTGGAAATCATCGGCCGCGAGAGCAACATCGGCATCGAGGTCGGCGAGCGCCGTGCCCATGCCGAGGCCCTGCTGGCC
GAAGAACAGCAGCGGCTGGCCGAACTCGAGGCGCGCTGGGCGGCCGAGAAGACGCTGGTCGATGAACTCCTCGCGCTGCG
CGCCAAGCTGCGCAGCGGCAGCCGCCCGGTGGAAGGCACCGGCAGCGCGCTGGAAGCCGCGGCCGAAGCGGCTGCGCCGG
AGGCCGCCGCCGAGAGCGCGCCCGAACCCGAGCGCGAGGCGCTGTTCGCGCGCCTGCGCGAAGTGCAGGCCGAACTCGCC
ACGCTGCAGGGCGAAGACCCGCTGATCCTGCCGACAGTGGACTACCAGGCGGTGGCCTCGGTGGTCGCCGACTGGACCGG
CATCCCGGTCGGCCGCATGGCGCGCAACGAAATCGAGAACGTGCTGCGCCTGCCGCAGCTGCTCGGCCAGCGCGTCATCG
GCCAGGACCACGCGATGGAGATGATCGCCAAGCGCATCCAGACTTCGCGCGCCGGGCTCGACAACCCCAACAAGCCGATC
GGCGTGTTCATGCTCGCCGGCACCTCGGGCGTCGGCAAGACCGAAACCGCGCTGGCACTGGCCGAAGCGCTGTACGGCGG
CGAGCAGAACGTCGTCACGATCAACATGAGCGAATTCCAGGAAGCGCACACCGTGTCCACGCTCAAGGGCGCGCCTCCGG
GCTACGTCGGCTACGGCGAAGGCGGCGTGCTGACCGAGGCGGTGCGGCGCAAGCCCTACAGCGTGGTGCTGCTCGACGAG
GTCGAGAAGGCCCACCCCGATGTGCACGAGATGTTCTTCCAGGTCTTCGACAAGGGCTTCATGGAAGACGGCGAAGGCCG
CTTCATCGACTTCAAGAACACCCTGATCCTGCTCACCACCAATGCCGGCACCGACCTCATCGCCAGCATGTGCAAGGACC
CCGACCTGCTGCCCGACCCGGAAGGCCTCGCCAAGGCGCTGCGCGACCCGCTGCTGAAGATCTTCCCGCCGGCGCTGCTC
GGCCGCCTCGTCACCATTCCCTACTACCCGCTGACCGACGCCATGCTGGGCGCCATCGTCCGGCTGCAGCTCGGGCGCAT
CAAGAAGCGCGTGGAAGCGCGCTACAAGATCCCGTTCGAGTATGGCGACGACGTGGTCGAGCTGGTGGTCAGCCGCTGCA
CCGAGAGCGAATCCGGCGGCCGCATGATCGACGCCATCCTGACCAACACCATGCTGCCCGACATCAGCCGCGAGTTCCTG
AACCGGACGATGGAAGGCAAGCCGATCGTGCGCGTGGCGATGGGAGTCGCGAATGCCGACTTCACCTACAACTTCGATTG
A