SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP001581
Component protein type	TssD
T6SS ID (Type)	T6SS00161 (Type i3)
Strain	Azoarcus olearius
Replicon	chromosome
Sequence	Protein sequence (169 a.a.); Nucleotide sequence (507 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603 [2] Shidore T, Dinse T, Öhrlein J, et al. Transcriptomic analysis of responses to exudates reveal genes required for rhizosphere competence of the endophyte Azoarcus sp. strain BH72. Environ Microbiol. 2012 Oct;14(10):2775-87. doi: 10.1111/j.1462-2920.2012.02777.x. Epub 2012 May 23. PMID: 22616609

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	AZO_RS19560
Coordinate (Strand)	4275831..4276337 (+)
NCBI ID	WP_011767620.1
RefSeq	NC_008702
Uniprot ID	A1KCF8_AZOSB
KEGG ID	aoa:dqs_4042, azo:azo3898
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	6.1e-35	7..146

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-168	MASGDMFLKIEGARMGPIKGEAQDALHKDEIDILSWSWGMQGNASATATAGGRSGGASQVSVSELVVSKGFDRASTALLVALRSNEQIKRAVLTMRKAGGPKAVEFLVITMENARIRSVQLSGAGTGDDPVHEQVSISFQKIAVEYRGQEGSGGGNAVSRFETDVTPQ

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9472	-	-

Protein sequence: 169 a.a.

						>T6CP001581 NC_008702:4275831-4276337 [Azoarcus olearius] [TssD]
MASGDMFLKIEGARMGPIKGEAQDALHKDEIDILSWSWGMQGNASATATAGGRSGGASQVSVSELVVSKGFDRASTALLV
ALRSNEQIKRAVLTMRKAGGPKAVEFLVITMENARIRSVQLSGAGTGDDPVHEQVSISFQKIAVEYRGQEGSGGGNAVSR
FETDVTPQ*					

Nucleotide sequence: 507 bp

						>T6CP001581 NC_008702:4275831-4276337 [Azoarcus olearius] [TssD]
ATGGCCTCCGGCGACATGTTCCTCAAAATCGAAGGCGCGCGCATGGGCCCCATCAAGGGCGAGGCCCAGGACGCCCTGCA
CAAGGACGAGATCGACATCCTGTCCTGGAGCTGGGGCATGCAGGGCAATGCCAGCGCCACCGCCACCGCGGGCGGCCGCA
GCGGCGGCGCCAGCCAGGTTTCGGTCAGCGAACTGGTCGTCTCCAAGGGTTTCGACCGCGCCAGCACCGCACTGCTGGTC
GCGCTGCGCTCCAACGAACAGATCAAGCGCGCCGTCCTCACGATGCGCAAGGCCGGTGGCCCGAAGGCGGTCGAGTTCCT
CGTCATCACGATGGAAAACGCCCGCATCCGCTCGGTCCAGCTGTCCGGCGCCGGCACCGGCGATGACCCGGTGCACGAGC
AGGTCTCCATCTCGTTCCAGAAAATCGCCGTCGAATACCGCGGCCAGGAAGGCAGCGGCGGCGGCAACGCCGTATCGCGC
TTCGAAACCGACGTCACGCCCCAATAA					