Detailed information of component protein


Summary

Component ID T6CP001576
Component protein type TssJ
T6SS ID (Type) T6SS00161 experimental (Type i3)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 4271065..4271583 (-)
NCBI ID WP_011767615.1
RefSeq NC_008702
Uniprot ID A1KCF3_AZOSB
KEGG ID aoa:dqs_4037, azo:azo3893
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-172 MNVRASALRVVLPAVAAAVLAACSKPVVAPPKPEPTVVTPTLAAAPRINIDTRGRPTPVVLRVYLLKNASAFEGADFFSLFDREQQVLGDAVLAREEIVLKPGETRTLDARDAEGARVVGVLAAFREVDRAVWRATVPVVPNRGNLVTIRVEDDRISLAATLAPLPPPKKAD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9947 pos: 22-23. LAA-CS. MNVRASALRVVLPAVAAAVLAA


  Protein sequence: 173 a.a.    


  Nucleotide sequence: 519 bp