Detailed information of component protein


Summary

Component ID T6CP001579
Component protein type TssC
T6SS ID (Type) T6SS00161 experimental (Type i3)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (499 a.a.); Nucleotide sequence (1497 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AZO_RS19550
Coordinate (Strand) 4273523..4275019 (+)
NCBI ID WP_011767618.1
RefSeq NC_008702
Uniprot ID A1KCF6_AZOSB
KEGG ID azo:azo3896
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 4.3e-136 69..371
VipB_2 PF18945.2 4.7e-44 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-498 MADTQAQNEAQAGGLAIEGGDFESLLRQEFKPKTDEARSAVENAVRTLAEQALSQTTLIGTDVVKSIEAIIAALDQKLTEQVNQIIHHEDFQKLEGAWRGLHYLVNNTETDEMLKIRVFNITKNELGKTLKRYKGTAWDQSPIFKRVYEEEYGQFGGEPFGCIVGDYHFDQSPPDVELLGEMAKVSAAAHTPFITGASPTIMQMDSWQELANPRDLTKIFSTPEYAAWRSLRESDDAKYIGLAMPRFLSRVPYGARTNPVEEFDFEEDTGAADHSKYTWANAAYAMAVNINRSFKEYGWCSRIRGIESGGAVENLPVHSFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHKKNSDFAAFIGAQSLHKPAEYDDPDATANANLGARLPYLFATCRFAHYLKCIVRDKIGSFKERDDMQRWLQDWIMNYVDGDPSHSSEATKARRPLAAAEVVVEEVEGNPGFYSSKFFLRPHYQLEGLTVSLRLVSKLPSAKGG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9914 - -


  Protein sequence: 499 a.a.    

>T6CP001579 NC_008702:4273523-4275019 [Azoarcus olearius] [TssC]
MADTQAQNEAQAGGLAIEGGDFESLLRQEFKPKTDEARSAVENAVRTLAEQALSQTTLIGTDVVKSIEAIIAALDQKLTE
QVNQIIHHEDFQKLEGAWRGLHYLVNNTETDEMLKIRVFNITKNELGKTLKRYKGTAWDQSPIFKRVYEEEYGQFGGEPF
GCIVGDYHFDQSPPDVELLGEMAKVSAAAHTPFITGASPTIMQMDSWQELANPRDLTKIFSTPEYAAWRSLRESDDAKYI
GLAMPRFLSRVPYGARTNPVEEFDFEEDTGAADHSKYTWANAAYAMAVNINRSFKEYGWCSRIRGIESGGAVENLPVHSF
PTDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHKKNSDFAAFIGAQSLHKPAEYDDPDATANANLGARLPYLFATCRF
AHYLKCIVRDKIGSFKERDDMQRWLQDWIMNYVDGDPSHSSEATKARRPLAAAEVVVEEVEGNPGFYSSKFFLRPHYQLE
GLTVSLRLVSKLPSAKGG*

  Nucleotide sequence: 1497 bp    

>T6CP001579 NC_008702:4273523-4275019 [Azoarcus olearius] [TssC]
ATGGCTGACACGCAAGCCCAGAACGAAGCCCAGGCCGGCGGCCTGGCCATTGAAGGTGGCGATTTCGAATCGCTGCTGCG
CCAGGAATTCAAGCCCAAGACCGACGAAGCCCGCAGCGCCGTCGAAAACGCCGTCCGCACGCTGGCCGAACAGGCCCTGT
CGCAGACCACGCTGATCGGCACCGACGTCGTCAAGTCGATCGAGGCGATCATCGCCGCGCTCGACCAGAAGCTCACCGAA
CAGGTCAACCAGATCATCCACCACGAGGACTTCCAGAAACTGGAAGGTGCCTGGCGCGGCCTGCACTACCTGGTGAACAA
CACCGAAACCGACGAGATGCTGAAGATCCGCGTCTTCAACATCACCAAGAACGAACTCGGCAAGACGCTCAAGCGCTACA
AGGGCACCGCGTGGGACCAGAGCCCGATCTTCAAGCGCGTCTATGAAGAGGAATACGGCCAGTTCGGCGGCGAGCCCTTC
GGTTGCATCGTCGGCGACTACCACTTCGACCAGAGCCCGCCGGACGTCGAACTGCTCGGCGAAATGGCCAAGGTCAGCGC
CGCCGCGCACACCCCGTTCATCACCGGCGCCTCGCCCACCATCATGCAGATGGACTCGTGGCAGGAACTCGCCAACCCGC
GCGATCTCACCAAGATCTTCTCCACGCCGGAATACGCCGCGTGGCGCTCGCTGCGCGAGTCCGACGATGCCAAGTACATC
GGCCTGGCGATGCCGCGCTTCCTGAGCCGCGTGCCCTACGGCGCCCGCACCAACCCGGTCGAGGAGTTCGACTTCGAGGA
AGACACCGGCGCCGCCGACCACAGCAAGTACACCTGGGCCAACGCGGCCTACGCGATGGCGGTCAACATCAACCGCTCGT
TCAAGGAATACGGCTGGTGCTCGCGCATCCGCGGCATCGAATCCGGCGGCGCGGTGGAAAACCTGCCGGTGCACAGCTTC
CCGACCGACGACGGCGGCGTGGACATGAAGTGCCCGACCGAAATCGCCATTTCCGACCGCCGCGAAGCCGAACTGGCCAA
GAACGGCTTCATGCCGCTGGTGCACAAGAAGAACTCCGACTTCGCCGCCTTCATCGGTGCGCAGTCGCTGCACAAGCCGG
CCGAGTACGACGATCCGGACGCGACCGCCAACGCCAACCTCGGCGCGCGCCTGCCCTACCTGTTCGCCACCTGCCGCTTC
GCCCACTACCTGAAGTGCATCGTGCGCGACAAGATCGGCTCGTTCAAGGAACGCGACGACATGCAGCGCTGGCTGCAGGA
CTGGATCATGAACTACGTCGACGGCGATCCTTCGCACTCGTCGGAAGCCACCAAGGCCCGCCGTCCGCTGGCGGCCGCCG
AGGTCGTGGTCGAGGAAGTCGAGGGCAATCCCGGCTTCTACTCGTCCAAGTTCTTCCTGCGCCCGCACTACCAGCTCGAA
GGCCTCACGGTTTCGCTGCGCCTGGTTTCCAAGCTGCCCTCGGCCAAGGGCGGCTGA