Detailed information of component protein


Summary

Component ID T6CP001575
Component protein type TssK
T6SS ID (Type) T6SS00161 experimental (Type i3)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AZO_RS19530
Coordinate (Strand) 4269682..4271016 (-)
NCBI ID WP_011767614.1
RefSeq NC_008702
Uniprot ID A1KCF2_AZOSB
KEGG ID aoa:dqs_4036, azo:azo3892
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 3.6e-153 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MSWFSKVVWSEGLFLRPQHFQQQDRYSEWRGDSLRRQLQPNGWGFSTLELDDAALAIGKVSIRAASGILPDGTPFDFPAAHEGPVAFDFPADAKDALVVLTLPLQRPLMPEYRIEGDDDALARYDVADAALPDAAGGGGSAEIVQVGRPRLALGLAQDYSDAFVRLGVLRVTERRPDGSLLVDRGYIPPVLGCGCAPQLASMLREVLGLLGQRGEALAGRMSQGGTGGVAEIADFLFLLAVNRHLPVMAHLEQLRPLHPERLYSQLLALMGELATLTAPERRPPALPAYRHDALQDSFDPLMREIRRALSSILEQNAVQIPLQDLKQGRYVGVIADRGLLRQAGFVLAVNAQIPAEAVRSRFPTQAKLGPVEKLRDLVNLQLPGIALRPLPVAPRQIPFHAGYTYFELDNSGDLWKQLDSSGGLGMYVTGDFPGLDVALWAIRA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9918 - -


  Protein sequence: 445 a.a.    

>T6CP001575 NC_008702:c4271016-4269682 [Azoarcus olearius] [TssK]
MSWFSKVVWSEGLFLRPQHFQQQDRYSEWRGDSLRRQLQPNGWGFSTLELDDAALAIGKVSIRAASGILPDGTPFDFPAA
HEGPVAFDFPADAKDALVVLTLPLQRPLMPEYRIEGDDDALARYDVADAALPDAAGGGGSAEIVQVGRPRLALGLAQDYS
DAFVRLGVLRVTERRPDGSLLVDRGYIPPVLGCGCAPQLASMLREVLGLLGQRGEALAGRMSQGGTGGVAEIADFLFLLA
VNRHLPVMAHLEQLRPLHPERLYSQLLALMGELATLTAPERRPPALPAYRHDALQDSFDPLMREIRRALSSILEQNAVQI
PLQDLKQGRYVGVIADRGLLRQAGFVLAVNAQIPAEAVRSRFPTQAKLGPVEKLRDLVNLQLPGIALRPLPVAPRQIPFH
AGYTYFELDNSGDLWKQLDSSGGLGMYVTGDFPGLDVALWAIRA*

  Nucleotide sequence: 1335 bp    

>T6CP001575 NC_008702:c4271016-4269682 [Azoarcus olearius] [TssK]
ATGTCCTGGTTCAGCAAGGTCGTATGGTCCGAAGGGCTGTTCCTGCGCCCGCAGCATTTCCAGCAGCAGGACCGCTATTC
GGAATGGCGCGGCGACAGCCTGCGCCGGCAGCTTCAGCCCAACGGCTGGGGTTTTTCCACGCTGGAACTCGATGACGCGG
CGCTCGCCATCGGCAAGGTCTCGATCCGCGCTGCCAGCGGCATCCTGCCGGACGGCACGCCGTTCGACTTTCCCGCTGCC
CACGAGGGGCCGGTTGCGTTCGACTTTCCCGCCGACGCCAAGGACGCGCTGGTGGTGCTGACGCTGCCACTGCAGCGCCC
GCTGATGCCGGAATACCGCATCGAAGGCGACGACGACGCACTCGCCCGCTACGACGTCGCCGACGCCGCCTTGCCCGACG
CCGCGGGCGGGGGCGGAAGCGCGGAGATCGTCCAGGTCGGGCGGCCGCGGCTCGCGCTCGGGCTGGCGCAGGATTACTCC
GACGCCTTCGTCCGCCTCGGCGTGCTGCGCGTGACCGAGCGGCGCCCCGACGGCAGCCTGCTGGTCGACCGCGGCTACAT
TCCGCCGGTGCTCGGCTGCGGCTGCGCGCCCCAGCTCGCGTCGATGCTGCGCGAGGTGCTCGGGCTGCTCGGCCAGCGCG
GCGAAGCGCTCGCCGGCCGCATGAGCCAGGGCGGCACCGGCGGCGTCGCGGAAATCGCCGACTTCCTGTTCCTGCTCGCG
GTCAATCGCCACCTGCCGGTGATGGCCCACCTCGAACAACTGCGGCCGCTCCATCCGGAGCGGCTGTACAGCCAGCTGCT
CGCGCTGATGGGCGAACTCGCCACGCTGACCGCGCCGGAACGGCGCCCACCCGCACTGCCGGCCTACCGCCACGACGCGC
TGCAGGATTCGTTCGACCCGCTGATGCGAGAGATCCGCCGCGCGCTGTCGTCCATCCTGGAACAGAACGCGGTGCAGATC
CCGCTGCAGGATCTCAAGCAGGGCCGCTACGTCGGCGTCATTGCCGACCGCGGCCTGCTGCGCCAGGCCGGCTTCGTGCT
GGCGGTCAACGCGCAGATTCCGGCCGAAGCGGTGCGCTCGCGCTTTCCCACCCAGGCCAAGCTCGGCCCGGTGGAAAAGC
TGCGCGACCTGGTCAACCTGCAGCTGCCCGGCATCGCGCTGCGGCCGCTGCCGGTGGCGCCGCGCCAGATTCCCTTCCAC
GCCGGATACACCTATTTCGAACTCGACAACAGCGGCGACCTGTGGAAGCAGCTCGACAGCTCGGGCGGCCTCGGCATGTA
CGTCACCGGGGATTTCCCCGGCCTCGACGTCGCGCTGTGGGCGATCCGTGCATGA