Detailed information of component protein


Summary

Component ID T6CP012734
Component protein type TagJ
T6SS ID (Type) T6SS00161 experimental (Type i3)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (274 a.a.); Nucleotide sequence (822 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AZO_RS19565
Coordinate (Strand) 4276353..4277174 (+)
NCBI ID WP_011767621.1
RefSeq NC_008702
Uniprot ID A1KCF9_AZOSB
KEGG ID azo:azo3899
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpE PF07024.15 6.6e-45 146..266
TPR_19 PF14559.8 6.3e-06 14..70
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-273 MSAPAKTLADAEAALRAGDPDAALAQLQAAVRSQPADAKLRVFLFQLLAVLGQWERALNQLNVATELDASTLAMAQMYRETLRCEVLRAEVFAGKRVPLLFGEPEQWLALLLESLLTAGRGDHAAALRLREQAFELAPASPGRIDGSPFAWLADADGRLGPVCEAVINGRYYWIPYARLASIDIEAPSDLRDFVWAPAHFVFTNGGETVGVIPTRYSGSESAADGALKLGRRTEWLEHDGDYRGLGQRLLTTDGAEYALLDIRRIEFDATVDG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9759 - -


  Protein sequence: 274 a.a.    

>T6CP012734 NC_008702:4276353-4277174 [Azoarcus olearius] [TagJ]
MSAPAKTLADAEAALRAGDPDAALAQLQAAVRSQPADAKLRVFLFQLLAVLGQWERALNQLNVATELDASTLAMAQMYRE
TLRCEVLRAEVFAGKRVPLLFGEPEQWLALLLESLLTAGRGDHAAALRLREQAFELAPASPGRIDGSPFAWLADADGRLG
PVCEAVINGRYYWIPYARLASIDIEAPSDLRDFVWAPAHFVFTNGGETVGVIPTRYSGSESAADGALKLGRRTEWLEHDG
DYRGLGQRLLTTDGAEYALLDIRRIEFDATVDG*

  Nucleotide sequence: 822 bp    

>T6CP012734 NC_008702:4276353-4277174 [Azoarcus olearius] [TagJ]
ATGTCCGCCCCCGCCAAAACCCTAGCCGACGCCGAAGCCGCGCTGCGCGCCGGCGACCCCGACGCCGCCCTCGCCCAGCT
GCAGGCCGCGGTACGGTCCCAGCCCGCCGATGCCAAGCTGCGTGTGTTCCTGTTCCAGTTGCTGGCCGTGCTCGGCCAGT
GGGAACGCGCCCTCAACCAGCTCAACGTCGCCACCGAACTCGACGCGTCCACGCTCGCGATGGCGCAGATGTACCGCGAG
ACGCTGCGCTGCGAAGTGCTGCGCGCCGAGGTCTTCGCCGGCAAGCGCGTTCCCTTGTTGTTCGGCGAACCCGAACAGTG
GCTCGCGCTGCTGCTCGAATCGCTGCTGACCGCGGGCCGCGGCGACCATGCCGCCGCGCTGCGCCTGCGCGAACAGGCGT
TCGAACTGGCACCCGCGAGCCCCGGCCGCATCGACGGCTCGCCCTTCGCGTGGCTCGCCGACGCCGACGGCCGCCTCGGC
CCGGTGTGCGAGGCGGTAATCAACGGCCGCTACTACTGGATTCCGTACGCGCGGCTCGCCAGCATCGACATCGAAGCGCC
GAGCGACCTGCGCGACTTCGTCTGGGCGCCCGCCCACTTCGTGTTCACCAACGGCGGCGAAACCGTGGGCGTGATCCCCA
CCCGCTACTCGGGTTCGGAAAGCGCCGCCGACGGCGCGCTCAAGCTCGGCCGCCGTACCGAATGGCTGGAGCACGACGGC
GACTACCGCGGCCTCGGTCAGCGCCTGCTGACCACCGACGGCGCCGAATACGCCCTGCTCGACATCCGCCGCATCGAGTT
CGACGCCACTGTCGATGGCTGA