Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01236  |
| T6SS type | Type i5 |
| Strain | Vibrio vulnificus 106-2A |
| Replicon (RefSeq) | chromosome (NZ_LMTD01000002) |
| Location | 431921..457308 |
| Function | anti-bacterial |
| Comment | Secretes Hcp-1 |
| References | [1] Church SR, Lux T, Baker-Austin C, Buddington SP, Michell SL. et al (2016) Vibrio vulnificus Type 6 Secretion System 1 Contains Anti-Bacterial Properties.. PLoS One. 11(10):e0165500. [PudMed:27798649] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | ImpE | PpkA | PppA | TagF | TagH | TssA | TssB | TssC | TssE | TssF | TssG | TssH | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| VV1062A_RS02865 | 430230..431138 | - | 909 | 1119684979 | NAD/NADP transhydrogenase subunit beta | ||
| VV1062A_RS02870 | 431139..431429 | - | 291 | 499393914 | PAAR domain-containing protein | ||
| VV1062A_RS02875 | 431439..431918 | - | 480 | pseudogene | type VI secretion system tip protein VgrG | ||
| VV1062A_RS02880 (tssI) | 431921..433384 | - | 1464 | 1867138636 | type VI secretion system tip protein VgrG | ||
| VV1062A_RS02885 | 433439..433917 | - | 479 | pseudogene | type VI secretion system tube protein Hcp | ||
| T6CP015521 | TssH | VV1062A_RS02890 (tssH) | 434133..436697 | - | 2565 | 1119684975 | type VI secretion system ATPase TssH |
| T6CP015522 | TssG | VV1062A_RS02895 (tssG) | 436710..437675 | - | 966 | 1119684973 | type VI secretion system baseplate subunit TssG |
| T6CP015523 | TssF | VV1062A_RS02900 (tssF) | 437672..439498 | - | 1827 | 1119684972 | type VI secretion system baseplate subunit TssF |
| T6CP015524 | TssE | VV1062A_RS02905 (tssE) | 439495..439968 | - | 474 | 515992149 | type VI secretion system baseplate subunit TssE |
| T6CP015525 | ImpE | VV1062A_RS02910 | 439965..440768 | - | 804 | 1119698324 | protein of avirulence locus |
| T6CP015526 | TssC | VV1062A_RS02915 (tssC) | 440779..442272 | - | 1494 | 782722927 | type VI secretion system contractile sheath large subunit |
| T6CP015527 | TssC | VV1062A_RS02920 (tssC) | 442317..443810 | - | 1494 | 782722922 | type VI secretion system contractile sheath large subunit |
| T6CP015528 | TssB | VV1062A_RS02925 (tssB) | 443822..444334 | - | 513 | 782722918 | type VI secretion system contractile sheath small subunit |
| T6CP015529 | TssA | VV1062A_RS02930 (tssA) | 444351..445484 | - | 1134 | 782722914 | type VI secretion system protein TssA |
| T6CP015530 | PppA | VV1062A_RS02935 | 445484..446278 | - | 795 | 1847663389 | protein phosphatase 2C domain-containing protein |
| T6CP015531 | TagF | VV1062A_RS02940 (tagF) | 446289..446984 | - | 696 | 1119684970 | type VI secretion system-associated protein TagF |
| T6CP015532 | TssM | VV1062A_RS02945 (tssM) | 446966..450490 | - | 3525 | 782722905 | type VI secretion system membrane subunit TssM |
| T6CP015533 | TssL | VV1062A_RS02950 (tssL) | 450468..451796 | - | 1329 | 1119684966 | type VI secretion system protein TssL, long form |
| T6CP015534 | TssK | VV1062A_RS02955 (tssK) | 451805..453127 | - | 1323 | 782731362 | type VI secretion system baseplate subunit TssK |
| T6CP015535 | TssJ | VV1062A_RS02960 (tssJ) | 453151..453606 | - | 456 | 1119684964 | type VI secretion system lipoprotein TssJ |
| T6CP015536 | TagH | VV1062A_RS02965 (tagH) | 453607..454824 | - | 1218 | 1119684962 | type VI secretion system-associated FHA domain protein TagH |
| T6CP015537 | PpkA | VV1062A_RS02970 | 455140..457308 | + | 2169 | 1119684960 | serine/threonine protein kinase |
| VV1062A_RS02980 | 457945..459318 | - | 1374 | 1119684958 | sensor domain-containing diguanylate cyclase | ||
| VV1062A_RS02985 | 459630..460893 | + | 1264 | pseudogene | threonine/serine exporter family protein | ||
| VV1062A_RS02990 | 460853..461131 | - | 279 | 782722786 | ribosome alternative rescue factor ArfA | ||
| VV1062A_RS02995 | 461591..461800 | + | 210 | 499394000 | cold-shock protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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