Detailed information of component protein


Summary

Component ID T6CP015537
Component protein type PpkA
T6SS ID (Type) T6SS01236 experimental (Type i5)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (723 a.a.); Nucleotide sequence (2169 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS02970
Coordinate (Strand) 455140..457308 (+)
NCBI ID 1119684960
RefSeq NZ_LMTD01000002
Uniprot ID UPI000925D624
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Pkinase PF00069.27 7.8e-38 100..317
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-722 MSVDNEKRNTQEEKNDKTKFIARSQKIGPEKNVEKSKIEPVSVKEINKEDNRNDKSHTKRPESKTAHPSTRTEVNTAVTGENHSSGYQTLEKGHLVKNRYVIDSLIGHGGLCDVYRAKDKVLESSGVASPFVALKVLQHEYIDQPETARMLIREAQHTQTLSHPNIIRVFDFGVDNKIYFIVMEYLDGETIEQLIQRSRPNGLAFPNAKVLLNQILDALIYAHSLDIVHADLKPANIMIDSAGTVKLLDFGVSKTERLKQDQYAAKRKVDDHQVLGYTPNYASLNIISGNKPCRQDDLFAFACMAYELLSCKHPYNRTPIDLAKKKAIPLKKPSGFPNTLWPDIKTILTDTSGQYKLSAESLKQRLNQNNRSKYAIAALIVLGLSTSLGVAHHLNSQIVQLEEANRQLAHSLQTQQQIINSQPESVFELSASDTIHPVLRAGLLRHHKQTLLAKFEQQIDEILNQSNNEYPDYDQVESVLKHAAIYYPDSHKLELLNLDMRSSKRSTLLSIERHINSVLEKGQYDAQQDGKSIVDLNNDLNSIQKNYPLTPSSLALEVFEQNLIDAIEQRNSIALTELLAIGATFFSTHEASQQRLLHAKEVNSAIIAMEKWKQAEENGQQAVYPYDAAQVLYGHKFASLHKKLENATTVNSLDQLVADIDNLAKDFPPNFPNISDLRFQTANKYLEFSDMLLRKRQSTSARSAMSKANQLLQQLDNNDFRG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9462 - -


  Protein sequence: 723 a.a.    

>T6CP015537 NZ_LMTD01000002:455140-457308 [Vibrio vulnificus] [PpkA]
MSVDNEKRNTQEEKNDKTKFIARSQKIGPEKNVEKSKIEPVSVKEINKEDNRNDKSHTKRPESKTAHPSTRTEVNTAVTG
ENHSSGYQTLEKGHLVKNRYVIDSLIGHGGLCDVYRAKDKVLESSGVASPFVALKVLQHEYIDQPETARMLIREAQHTQT
LSHPNIIRVFDFGVDNKIYFIVMEYLDGETIEQLIQRSRPNGLAFPNAKVLLNQILDALIYAHSLDIVHADLKPANIMID
SAGTVKLLDFGVSKTERLKQDQYAAKRKVDDHQVLGYTPNYASLNIISGNKPCRQDDLFAFACMAYELLSCKHPYNRTPI
DLAKKKAIPLKKPSGFPNTLWPDIKTILTDTSGQYKLSAESLKQRLNQNNRSKYAIAALIVLGLSTSLGVAHHLNSQIVQ
LEEANRQLAHSLQTQQQIINSQPESVFELSASDTIHPVLRAGLLRHHKQTLLAKFEQQIDEILNQSNNEYPDYDQVESVL
KHAAIYYPDSHKLELLNLDMRSSKRSTLLSIERHINSVLEKGQYDAQQDGKSIVDLNNDLNSIQKNYPLTPSSLALEVFE
QNLIDAIEQRNSIALTELLAIGATFFSTHEASQQRLLHAKEVNSAIIAMEKWKQAEENGQQAVYPYDAAQVLYGHKFASL
HKKLENATTVNSLDQLVADIDNLAKDFPPNFPNISDLRFQTANKYLEFSDMLLRKRQSTSARSAMSKANQLLQQLDNNDF
RG*

  Nucleotide sequence: 2169 bp    

>T6CP015537 NZ_LMTD01000002:455140-457308 [Vibrio vulnificus] [PpkA]
ATGTCAGTTGATAATGAGAAGAGAAACACGCAAGAAGAGAAAAATGACAAGACTAAATTTATTGCGCGTTCACAAAAAAT
CGGTCCAGAAAAGAATGTAGAAAAAAGTAAAATAGAACCAGTTAGTGTTAAAGAAATAAATAAAGAAGACAATAGAAACG
ACAAATCTCACACTAAAAGACCCGAATCAAAAACAGCTCACCCCTCAACAAGAACAGAGGTAAACACCGCTGTGACGGGG
GAAAATCATTCTTCCGGTTATCAAACTCTAGAGAAAGGCCATTTAGTTAAAAATCGTTACGTGATTGACAGCCTAATTGG
GCATGGTGGCCTATGTGACGTCTACCGAGCCAAAGATAAAGTTCTTGAATCATCTGGAGTTGCTAGTCCTTTTGTCGCAC
TCAAAGTATTGCAGCACGAATACATCGACCAACCAGAGACTGCGCGAATGCTTATCCGAGAGGCGCAGCATACTCAAACC
TTGAGCCACCCCAACATCATTCGTGTTTTTGATTTTGGCGTCGATAACAAAATTTATTTTATTGTGATGGAATACTTAGA
TGGAGAGACCATCGAACAGTTGATTCAGCGTTCCAGACCCAATGGCTTAGCGTTTCCTAATGCCAAAGTCCTACTAAACC
AAATACTCGATGCTCTGATATATGCTCATTCGCTTGATATCGTACACGCAGACCTGAAGCCCGCTAACATCATGATCGAT
TCAGCCGGTACGGTAAAATTGCTCGACTTTGGTGTGTCAAAAACTGAACGCCTCAAACAAGATCAGTACGCCGCCAAGCG
TAAAGTCGATGATCATCAAGTATTGGGATATACACCAAATTATGCATCCCTCAATATTATTAGCGGTAATAAGCCATGCA
GACAGGACGATCTGTTTGCGTTTGCCTGCATGGCATACGAACTACTATCTTGCAAGCATCCCTATAATCGAACCCCTATC
GATTTGGCTAAGAAAAAGGCGATTCCGCTAAAGAAACCCTCTGGTTTTCCAAATACCCTATGGCCCGATATTAAAACGAT
TCTCACCGACACCAGCGGTCAGTACAAGCTCAGTGCCGAGTCACTGAAACAGAGACTCAACCAAAATAATCGCTCAAAAT
ATGCGATAGCTGCATTGATTGTTCTCGGTTTATCCACCTCTCTTGGTGTTGCGCATCACTTAAACTCGCAGATCGTGCAG
TTGGAAGAGGCCAATCGCCAATTGGCTCATTCGCTACAAACGCAACAACAGATCATTAATAGCCAGCCTGAGTCAGTCTT
CGAACTTAGCGCATCCGATACCATCCATCCGGTTTTAAGAGCCGGATTACTGCGGCATCACAAGCAAACGCTTCTCGCGA
AATTCGAGCAACAGATTGATGAAATTCTCAACCAAAGCAATAACGAGTATCCCGATTACGATCAAGTCGAATCTGTCCTG
AAGCACGCGGCCATCTACTACCCAGATTCCCACAAGCTTGAATTGCTCAACCTTGACATGCGCTCGAGCAAGCGTTCAAC
ATTGCTGTCAATTGAAAGACACATCAATTCTGTACTCGAAAAAGGTCAATACGATGCTCAACAGGATGGGAAATCGATCG
TTGATCTCAACAATGATTTAAATTCCATTCAAAAGAATTATCCGCTCACTCCATCATCACTGGCATTGGAAGTATTTGAG
CAAAATCTTATTGACGCAATTGAGCAGCGTAACTCAATTGCACTCACAGAGCTGCTGGCGATAGGCGCGACGTTTTTTAG
TACTCATGAAGCTTCACAGCAGAGATTGCTACATGCTAAGGAAGTGAATTCAGCCATCATTGCCATGGAGAAGTGGAAAC
AAGCTGAAGAAAATGGGCAGCAGGCGGTATACCCCTATGATGCAGCGCAGGTTCTTTATGGGCACAAGTTTGCCTCATTA
CATAAAAAGCTTGAAAACGCGACAACCGTTAACTCACTCGATCAGTTAGTGGCCGATATCGATAACCTCGCCAAGGATTT
CCCGCCAAACTTCCCAAACATCTCTGATCTGCGTTTTCAAACTGCCAACAAGTATCTGGAGTTTTCAGATATGCTGCTGA
GAAAACGCCAATCAACTAGTGCAAGAAGTGCTATGAGCAAAGCCAATCAATTACTTCAACAACTAGATAACAATGATTTT
CGAGGTTAA