Detailed information of component protein


Summary

Component ID T6CP015529
Component protein type TssA
T6SS ID (Type) T6SS01236 experimental (Type i5)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (378 a.a.); Nucleotide sequence (1134 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS02930
Coordinate (Strand) 444351..445484 (-)
NCBI ID 782722914
RefSeq NZ_LMTD01000002
Uniprot ID UPI0005F1B67A
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 8.1e-29 16..144
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-377 MSHHYEEFTWFEPALLPISDEQPAGVDPRSDITPQSLYYRLKDQRMQARNIERNAIIEEEPILNYANLWQVFLDEVPPALASQTKDLEYVAWLIEALTRLDGFKGMAVGYELATYYLENYWADLYPMPDEDGLETRISPIIGLNGIDNEGTLIFPLSCIPMTEGLSEQPYAYWEYQQALDLERCDEDKKRAKRDQGVPELSDITQAVKSSSSQFYQKLIEDLNRAISSFERFSQALDSACEEVTPSSYISRKLDAIHSAIMHLASDKMIKVSKETNSDESSNSASSHEGESDGRGQGEANFQLLAANMHSREQAIVQLQRVADFFRETEPHSPVSYTIEQVIRWCGMSLPELLAELISDGDAKKGYFRLVGIADKNE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9914 - -


  Protein sequence: 378 a.a.    

>T6CP015529 NZ_LMTD01000002:c445484-444351 [Vibrio vulnificus] [TssA]
MSHHYEEFTWFEPALLPISDEQPAGVDPRSDITPQSLYYRLKDQRMQARNIERNAIIEEEPILNYANLWQVFLDEVPPAL
ASQTKDLEYVAWLIEALTRLDGFKGMAVGYELATYYLENYWADLYPMPDEDGLETRISPIIGLNGIDNEGTLIFPLSCIP
MTEGLSEQPYAYWEYQQALDLERCDEDKKRAKRDQGVPELSDITQAVKSSSSQFYQKLIEDLNRAISSFERFSQALDSAC
EEVTPSSYISRKLDAIHSAIMHLASDKMIKVSKETNSDESSNSASSHEGESDGRGQGEANFQLLAANMHSREQAIVQLQR
VADFFRETEPHSPVSYTIEQVIRWCGMSLPELLAELISDGDAKKGYFRLVGIADKNE*

  Nucleotide sequence: 1134 bp    

>T6CP015529 NZ_LMTD01000002:c445484-444351 [Vibrio vulnificus] [TssA]
ATGAGTCATCACTATGAGGAGTTCACTTGGTTTGAGCCTGCCTTACTGCCAATTTCTGACGAGCAGCCAGCAGGTGTGGA
TCCAAGAAGTGATATTACGCCTCAGTCACTCTATTACCGACTGAAAGATCAGAGAATGCAGGCGCGAAATATTGAGCGAA
ATGCCATTATTGAAGAAGAGCCTATTCTTAACTATGCCAACCTCTGGCAAGTGTTTCTTGATGAAGTTCCGCCGGCACTG
GCGTCACAAACCAAAGATCTCGAGTACGTGGCATGGCTTATCGAAGCGTTAACTCGTCTTGATGGTTTTAAAGGAATGGC
GGTTGGCTATGAACTGGCCACCTACTACTTAGAAAATTATTGGGCAGATCTGTATCCAATGCCGGATGAAGATGGCCTAG
AAACAAGAATTTCGCCCATCATCGGCCTGAATGGCATCGATAATGAGGGGACGCTCATTTTTCCGTTATCGTGCATACCC
ATGACCGAAGGGCTGTCAGAACAACCTTATGCGTATTGGGAGTATCAACAAGCTTTGGACTTGGAGCGCTGTGATGAGGA
CAAGAAACGAGCCAAACGCGATCAGGGTGTCCCTGAGTTATCTGACATTACCCAAGCCGTCAAATCGTCGAGCAGTCAGT
TCTACCAAAAACTGATAGAGGATCTAAATAGAGCGATAAGTTCTTTTGAACGATTTTCGCAGGCTTTGGATAGTGCGTGT
GAAGAAGTCACCCCCAGTTCTTACATTTCTCGAAAATTGGATGCAATACACTCGGCAATTATGCATTTGGCGAGTGACAA
AATGATCAAGGTTTCAAAAGAAACGAATTCAGATGAATCATCGAACTCTGCCTCCAGTCACGAAGGCGAGAGCGATGGAC
GAGGGCAGGGCGAAGCTAATTTTCAGTTATTGGCCGCTAATATGCACTCTCGTGAACAGGCCATAGTGCAGTTGCAACGA
GTGGCTGATTTTTTTCGTGAAACAGAACCACATTCACCCGTTTCATACACGATTGAACAAGTGATTCGATGGTGTGGAAT
GTCTTTGCCAGAACTCCTGGCAGAGCTTATTTCCGATGGAGACGCCAAGAAAGGCTATTTCCGTTTGGTTGGCATAGCAG
ACAAAAATGAGTAA