Detailed information of component protein


Summary

Component ID T6CP015521
Component protein type TssH
T6SS ID (Type) T6SS01236 experimental (Type i5)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (855 a.a.); Nucleotide sequence (2565 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS02890
Coordinate (Strand) 434133..436697 (-)
NCBI ID 1119684975
RefSeq NZ_LMTD01000002
Uniprot ID UPI000926A716
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.8e-39 587..754
AAA_lid_9 PF17871.3 7.7e-27 352..446
ClpB_D2-small PF10431.11 3.5e-10 759..833
AAA PF00004.31 2.7e-09 212..325
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-854 MSNLSLSTLVDKLTPEAKRALEQAAALASSRTHHSIEMTHWLLTLVQSAGPEEIELYRSFKVDLNQLQTDLTLQLDKYKTGCQTVPGLSSHTVTILQNAWMTATIAFEAEKIAAVHLLHAFLSDDTLFALSSTVSKELSKIQPSALIEYAQTHVELANQIPNHRASTQALDQFTIDLTEQAELGQIDPVIGRDDEIRLMTDILLRRRQNNPILTGEAGVGKTAVVEGLALKIAQGDVPPALKAVRIKSLDLALLQAGAGMKGEFENRLKNVVKEVKESAVPIVLFIDEAHGLIGGGAQAGQGDAANILKPALARGELRTIAATTWAEYKKYVEKDAALTRRFQVVKIEEPSPELAIEMLRGLVPVMEKHHGVHITTEALKAAVFLSSRYISGRQLPDKAVSVLDTACSRVALSQNSIPGLLDQKYKKRQMIEAQQLQLTNELAFGHSHQTALDELESKLSLLQNEIHQLETTWRDEEGAVKQAKALRDSILAEPSAEKANQLQSIEQQLSSNPMPLVFSHVNEALIAEIIAGWTGIPLGKLKSDEIKAILDLQQHLQERVVGQDHALSKMAEVIKTARAQLNEESKPNGIFFLVGPSGVGKTESALAIAEQVYGSEENITVINMSEFKEEHKVSLLLGSPPGYVGYGEGGVLTEAVRRKPYSVILLDEMEKAHPGVQDIFYQVFDKGMIKDGEGRDIDFKNTIIIMTSNSGTETTMELFQDPELAPDPEALKEALRDDLLQDFKPAFLGRVNVIPYIPLHRDVLEKITALKLSKIQKRIKTNYKAEAVINDRLINSIVDSCNETGSGARALQNVIENKVLPKISESVLNAILNDIRINKIEIEGEVDDLSISIV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9831 - -


  Protein sequence: 855 a.a.    

>T6CP015521 NZ_LMTD01000002:c436697-434133 [Vibrio vulnificus] [TssH]
MSNLSLSTLVDKLTPEAKRALEQAAALASSRTHHSIEMTHWLLTLVQSAGPEEIELYRSFKVDLNQLQTDLTLQLDKYKT
GCQTVPGLSSHTVTILQNAWMTATIAFEAEKIAAVHLLHAFLSDDTLFALSSTVSKELSKIQPSALIEYAQTHVELANQI
PNHRASTQALDQFTIDLTEQAELGQIDPVIGRDDEIRLMTDILLRRRQNNPILTGEAGVGKTAVVEGLALKIAQGDVPPA
LKAVRIKSLDLALLQAGAGMKGEFENRLKNVVKEVKESAVPIVLFIDEAHGLIGGGAQAGQGDAANILKPALARGELRTI
AATTWAEYKKYVEKDAALTRRFQVVKIEEPSPELAIEMLRGLVPVMEKHHGVHITTEALKAAVFLSSRYISGRQLPDKAV
SVLDTACSRVALSQNSIPGLLDQKYKKRQMIEAQQLQLTNELAFGHSHQTALDELESKLSLLQNEIHQLETTWRDEEGAV
KQAKALRDSILAEPSAEKANQLQSIEQQLSSNPMPLVFSHVNEALIAEIIAGWTGIPLGKLKSDEIKAILDLQQHLQERV
VGQDHALSKMAEVIKTARAQLNEESKPNGIFFLVGPSGVGKTESALAIAEQVYGSEENITVINMSEFKEEHKVSLLLGSP
PGYVGYGEGGVLTEAVRRKPYSVILLDEMEKAHPGVQDIFYQVFDKGMIKDGEGRDIDFKNTIIIMTSNSGTETTMELFQ
DPELAPDPEALKEALRDDLLQDFKPAFLGRVNVIPYIPLHRDVLEKITALKLSKIQKRIKTNYKAEAVINDRLINSIVDS
CNETGSGARALQNVIENKVLPKISESVLNAILNDIRINKIEIEGEVDDLSISIV*

  Nucleotide sequence: 2565 bp    

>T6CP015521 NZ_LMTD01000002:c436697-434133 [Vibrio vulnificus] [TssH]
ATGTCGAATCTATCACTATCTACACTAGTTGACAAGTTAACCCCTGAAGCGAAAAGAGCATTGGAGCAAGCCGCTGCTTT
GGCGAGCTCAAGAACCCACCACAGCATTGAAATGACACATTGGCTGCTTACGCTAGTGCAAAGTGCTGGGCCTGAAGAAA
TCGAACTGTATCGTTCGTTTAAGGTTGATCTGAACCAATTGCAGACGGATCTCACTTTGCAATTAGATAAGTACAAAACG
GGCTGTCAAACTGTACCGGGGTTGTCATCCCATACGGTCACCATACTACAGAATGCGTGGATGACAGCGACGATCGCGTT
TGAAGCAGAAAAAATTGCTGCTGTTCATTTGCTTCATGCCTTCCTCTCTGACGACACGCTGTTTGCCCTATCTTCGACAG
TAAGCAAAGAGCTAAGCAAAATTCAACCTAGCGCGTTAATCGAATACGCTCAGACTCATGTTGAACTGGCTAATCAAATT
CCCAACCACAGAGCTTCTACACAAGCGTTGGATCAATTTACGATAGATCTGACAGAGCAAGCGGAGCTGGGGCAAATTGA
TCCGGTGATTGGCCGCGATGATGAAATTCGGCTGATGACGGATATTCTTCTGCGACGCCGTCAAAATAACCCTATCCTGA
CGGGTGAGGCGGGGGTAGGTAAAACCGCCGTTGTCGAAGGACTTGCGCTAAAAATCGCTCAAGGGGATGTGCCTCCCGCG
CTTAAAGCAGTGAGAATTAAATCACTTGATTTGGCGCTACTCCAGGCCGGTGCTGGTATGAAGGGCGAGTTTGAAAATCG
ATTGAAGAACGTGGTCAAAGAAGTCAAAGAGTCTGCGGTACCTATCGTACTGTTTATCGATGAAGCGCATGGATTGATTG
GTGGAGGGGCACAGGCTGGTCAAGGTGATGCTGCGAACATACTTAAGCCCGCCTTAGCCAGAGGAGAGCTACGCACGATC
GCCGCAACCACATGGGCTGAATACAAAAAATATGTAGAGAAAGACGCAGCTCTGACCCGTCGTTTTCAAGTGGTTAAAAT
AGAGGAACCTTCACCTGAATTGGCGATCGAGATGCTGCGTGGCCTCGTTCCTGTCATGGAAAAACATCATGGCGTCCACA
TTACTACCGAGGCACTCAAGGCTGCCGTCTTTCTTTCTTCTCGCTACATTAGCGGCCGTCAGTTGCCAGACAAGGCGGTA
TCGGTTTTAGATACCGCGTGCTCTCGTGTTGCTTTGAGTCAAAACTCGATACCAGGGCTGCTTGATCAGAAATACAAAAA
ACGCCAAATGATAGAAGCTCAACAGCTTCAGCTCACCAATGAACTTGCATTTGGTCATTCTCATCAAACAGCTCTTGACG
AACTTGAGAGCAAGTTGTCGCTCCTTCAAAATGAAATTCACCAACTAGAGACAACGTGGCGAGATGAAGAAGGCGCAGTC
AAGCAGGCCAAAGCGCTCCGTGATTCCATTTTGGCAGAACCATCTGCAGAGAAAGCCAATCAGCTGCAATCCATTGAACA
GCAGTTATCGTCTAACCCGATGCCTTTGGTGTTTTCGCATGTTAACGAAGCCCTAATTGCTGAAATTATTGCAGGCTGGA
CAGGCATACCATTAGGCAAACTAAAAAGCGATGAAATAAAAGCGATTCTAGACTTACAGCAACATCTGCAAGAGCGAGTG
GTCGGCCAAGATCACGCGTTGAGTAAAATGGCGGAAGTGATCAAAACCGCGAGAGCACAGCTCAATGAAGAATCAAAACC
TAACGGTATCTTTTTCTTGGTAGGCCCAAGTGGTGTCGGTAAAACGGAATCTGCGTTGGCCATTGCTGAGCAAGTGTATG
GTAGTGAAGAAAACATCACCGTCATTAACATGTCTGAATTTAAAGAAGAGCATAAAGTGTCGTTACTGCTGGGCTCTCCT
CCGGGCTACGTTGGGTATGGCGAAGGTGGTGTGCTAACGGAAGCCGTAAGAAGAAAACCTTACAGCGTCATATTGCTTGA
TGAAATGGAGAAAGCCCATCCGGGTGTACAGGATATTTTCTATCAAGTGTTTGATAAGGGCATGATTAAAGACGGTGAAG
GGCGAGACATCGATTTCAAAAACACCATCATTATCATGACTTCCAACTCTGGGACGGAAACAACAATGGAGTTATTCCAA
GATCCAGAGCTTGCTCCGGATCCGGAGGCACTCAAAGAAGCGCTACGAGACGATTTGTTACAGGATTTCAAGCCCGCTTT
TTTAGGTCGAGTGAATGTCATTCCTTATATCCCTTTGCACCGTGATGTATTGGAGAAAATCACCGCGCTGAAACTCTCCA
AAATTCAGAAGAGGATAAAAACAAACTATAAAGCAGAAGCGGTGATCAACGATCGCTTAATTAATAGTATTGTTGACAGC
TGCAATGAAACGGGCAGTGGCGCGCGTGCTCTTCAAAATGTGATTGAAAATAAGGTGCTGCCTAAAATATCTGAATCCGT
ATTAAATGCCATCCTTAATGATATAAGAATTAATAAAATTGAGATAGAAGGTGAAGTTGATGACTTGTCTATCTCAATCG
TCTAA