Detailed information of component protein
Summary
| Component ID | T6CP015532 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS01236  (Type i5) |
| Strain | Vibrio vulnificus 106-2A |
| Replicon | chromosome |
| Sequence | Protein sequence (1175 a.a.); Nucleotide sequence (3525 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 446966..450490 (-) |
| NCBI ID | 782722905 |
| RefSeq | NZ_LMTD01000002 |
| Uniprot ID | UPI0005F24C70 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-15 | MQTMAKIKRLLGQKW |
| Transmembrane helix | 16-38 | LISLIGLGAISIFIWFVGPLIAI |
| Outside | 39-47 | AGIEPLKSD |
| Transmembrane helix | 48-67 | FNRLLVIVVLVFIWGVTNVV |
| Inside | 68-446 | RQQKERKEQDESIQSLLEVDALTDKEAAAEIDVMRERIEKAIQVVTKGGKRKSHLYELPWYVLIGPPGTGKTTALKESGLEFPLSDSMGVDSVSGIGGTRNCDWWFTNKAVLIDTAGRYTTQDSQAHVDSKAWYGFLGLLKQYRKQRPINGAIVTVSIASMLTQTRTERGMHARAIKNRLQELKNQLGMQFPIYVVLTKADLIAGFSEFFTELTKEEREQLLGFMFPPSTEDERGVISLFNKEFHDLLERLDRRMMQRLETEHDLDKRSLIFEFPKQLRCLQANLDEFLNDIFAQNKFEESSMIRGVFIVSSLQEGTPVDRIMSETSQGLGLGKPLLRLSSKESSSYFVKNLFENVIFKEQFLGTVNRHHQKQSGWIRK |
| Transmembrane helix | 447-469 | GVYCSCMALSGAAITLWMMSYQW |
| Outside | 470-1174 | NNQLIDETDRQVTVVNDLLAKSGLDFENDLIPSINILNHIMRFPMGYRQQDDERDRVTSFGFFQGEKIGQSAKSAYHQALTNYYSSYVESVLLSEMKNNEQHREYLYETLKTYLMLFNDDKFEREHVLGWFNYFFERQYPGELNEELREQLYAHTENFLSQADRGLYINNDSVTAARLVLTEMSLSERAYQRMKLQFLKSHVPSFRLTDVLGARGVEQFERKSGKPLSMGISGFYTYNGFHSIFQLQLGRMVKALMEENWVYGDEIDAQNIDNDLALQGVRERYYRDYVYEWKTLLNDIQLKAAPSLKLSLEQSMTLAGSERPIESLLKAVQKEVALTKISLSNNEKAAAEVAGKVAKVKFSNTADKLDLYRPEEGNTFDIALPGKEVEAEFDDLVRMTDQDFDDIHLALSGLKSYLADLSSSGNNQKVAYKSILNGTVTGEVAASIEHAKQLLPAPFNNWLGELSEESVKLAEKGSRSHLNTLWVNKVLKPYERSIKGRYPFEPRAKTEVTLKDFSRFFGYGGTLDAFFVEYLEPFVDTSRSVWRFEKEIGVSQETLAVFQRADRIRQSFFELDNTLKVDFAMKPIYLDQHITSFVLEVGGQNLAYRHGPARVKNLSWPAKRSATRVVFTPPDSIREIAYTYEGEWGIFKLLDQSLKARPQSRKDNIVMIDLKGNKVQLELIPKSTMNPFWSSDMESFRCPQTL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9952 | - | - |
Protein sequence: 1175 a.a.
Nucleotide sequence: 3525 bp