Detailed information of component protein


Summary

Component ID T6CP015523
Component protein type TssF
T6SS ID (Type) T6SS01236 experimental (Type i5)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (609 a.a.); Nucleotide sequence (1827 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS02900
Coordinate (Strand) 437672..439498 (-)
NCBI ID 1119684972
RefSeq NZ_LMTD01000002
Uniprot ID UPI000926BD0E
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 9.9e-178 1..605
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-608 MSEDFLKYYNRELAYLRHKGHEFGEQYPKIAARLRMNDEVVEDPHVSRLLEGCAFLSARIRQSLDNAFPQLTEALIGQLFPDFHAPIPSMSIVQLKGTTSSSSAFTVAKGERVTITAPGYQECDFKTCCATQVHPFDVTDAQFENAPFSGTECRMELAAKSVLKLEIQSNNAELSLSTLDDSCLRFYLSGQRQAALQLYQQIFQSCIGLSLVQGGRCKKELTPRHIRSLGFDDQIQAVPYSKRSFSGTRLLIEYLHFPEKFLFFELTDLDLSVLASEQGKAEIWLYFAEGNDWLEKQVSVENIALGAVPVVNLYQAKMKPMRVQASEYEYQLHPEHCDPESSEVVSIDDVTLRNWNKVFENLPPYYAGTHTHYQTQYDLFWLMRREDRNWAGGFDEPGREVFVSLVDRKHQLFAPDAKESWLMSIDTWCCNRNLPAKIPFGGGLPLVTLPESQDNFSRVRCLTTPTETIRAEMDETTRWQFAKLITLDHFCNQQGAETLKQILNLLAFRGSPETKALIDSIKGMSTKMTTGRVVQNGRVGFCHGSEITLTISDQILSREQIFLLGNVLSSYFSQFAEVNTFTRLLIKLSSTGALFHKWPSMAGERELL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9959 - -


  Protein sequence: 609 a.a.    

>T6CP015523 NZ_LMTD01000002:c439498-437672 [Vibrio vulnificus] [TssF]
MSEDFLKYYNRELAYLRHKGHEFGEQYPKIAARLRMNDEVVEDPHVSRLLEGCAFLSARIRQSLDNAFPQLTEALIGQLF
PDFHAPIPSMSIVQLKGTTSSSSAFTVAKGERVTITAPGYQECDFKTCCATQVHPFDVTDAQFENAPFSGTECRMELAAK
SVLKLEIQSNNAELSLSTLDDSCLRFYLSGQRQAALQLYQQIFQSCIGLSLVQGGRCKKELTPRHIRSLGFDDQIQAVPY
SKRSFSGTRLLIEYLHFPEKFLFFELTDLDLSVLASEQGKAEIWLYFAEGNDWLEKQVSVENIALGAVPVVNLYQAKMKP
MRVQASEYEYQLHPEHCDPESSEVVSIDDVTLRNWNKVFENLPPYYAGTHTHYQTQYDLFWLMRREDRNWAGGFDEPGRE
VFVSLVDRKHQLFAPDAKESWLMSIDTWCCNRNLPAKIPFGGGLPLVTLPESQDNFSRVRCLTTPTETIRAEMDETTRWQ
FAKLITLDHFCNQQGAETLKQILNLLAFRGSPETKALIDSIKGMSTKMTTGRVVQNGRVGFCHGSEITLTISDQILSREQ
IFLLGNVLSSYFSQFAEVNTFTRLLIKLSSTGALFHKWPSMAGERELL*

  Nucleotide sequence: 1827 bp    

>T6CP015523 NZ_LMTD01000002:c439498-437672 [Vibrio vulnificus] [TssF]
ATGAGTGAAGATTTTCTGAAATACTACAATCGAGAACTCGCGTATTTGCGTCATAAAGGCCATGAATTTGGGGAACAATA
CCCTAAGATTGCCGCTCGATTGCGAATGAATGATGAAGTCGTTGAAGACCCTCATGTGTCAAGGCTTCTCGAAGGGTGTG
CTTTTCTCTCTGCTCGTATTCGACAAAGCTTGGATAACGCGTTTCCACAGCTAACCGAAGCGTTAATAGGGCAGCTATTT
CCCGATTTTCACGCCCCAATTCCGTCAATGTCGATTGTGCAGTTGAAAGGAACGACTTCGTCGTCGTCGGCGTTTACGGT
GGCCAAAGGAGAACGCGTCACGATCACGGCACCGGGATACCAAGAGTGTGACTTCAAAACATGCTGTGCCACACAAGTTC
ATCCTTTTGATGTCACTGACGCCCAGTTTGAAAATGCCCCTTTTAGTGGCACAGAATGTCGTATGGAGCTCGCTGCCAAG
TCAGTGCTCAAACTCGAAATTCAATCGAACAATGCTGAGTTGAGCCTATCCACTCTGGATGATTCATGCCTGCGATTCTA
TCTGAGTGGTCAACGACAAGCCGCTCTGCAGCTTTATCAACAAATTTTTCAATCCTGCATTGGCCTAAGCTTGGTACAAG
GAGGTCGATGCAAAAAAGAGCTCACGCCACGTCACATACGTTCATTGGGCTTCGACGACCAAATACAAGCGGTTCCATAC
AGTAAGCGTAGCTTTTCTGGCACGCGTCTATTGATCGAGTACTTGCACTTCCCCGAAAAATTTCTCTTTTTTGAGCTGAC
AGACTTAGATCTCTCAGTCCTCGCTAGCGAACAAGGGAAAGCGGAAATCTGGCTCTATTTTGCAGAGGGCAACGACTGGT
TGGAGAAACAAGTCTCTGTCGAAAATATCGCCTTAGGAGCAGTTCCGGTTGTCAATCTTTATCAAGCGAAAATGAAGCCA
ATGAGGGTGCAAGCCTCTGAATATGAATATCAACTGCATCCAGAGCACTGCGATCCAGAGTCGAGTGAAGTGGTCAGTAT
TGATGACGTCACTTTAAGAAACTGGAATAAGGTCTTCGAAAACTTGCCGCCTTACTATGCAGGGACGCATACCCACTATC
AAACGCAATATGATCTGTTCTGGTTAATGCGTAGAGAAGATAGAAACTGGGCTGGTGGTTTTGATGAACCCGGGCGGGAA
GTGTTCGTATCACTGGTTGATCGTAAGCACCAATTGTTTGCTCCCGATGCGAAAGAAAGTTGGTTGATGTCGATCGACAC
GTGGTGTTGCAATCGTAATCTCCCCGCCAAAATTCCGTTTGGTGGAGGGCTTCCTTTGGTCACATTGCCTGAGAGTCAGG
ACAATTTTAGTCGCGTTCGTTGCTTGACCACGCCAACCGAAACCATTCGCGCCGAAATGGATGAGACGACTCGATGGCAG
TTTGCAAAACTGATTACATTGGATCATTTCTGCAATCAACAAGGAGCGGAAACGCTCAAGCAAATCTTGAACTTGCTGGC
TTTTAGAGGTTCGCCAGAAACCAAAGCATTGATCGATTCAATTAAAGGTATGTCGACAAAGATGACGACTGGGCGTGTGG
TACAAAATGGTCGGGTCGGTTTTTGCCACGGCAGCGAAATCACCTTAACGATTTCCGATCAGATTTTGTCTCGAGAACAG
ATCTTTTTGTTAGGAAACGTGCTATCGAGTTACTTCTCACAATTCGCTGAAGTCAACACGTTCACACGGCTACTTATTAA
GCTCTCCTCCACTGGGGCGTTATTCCATAAATGGCCATCGATGGCGGGAGAGAGAGAGCTGTTATGA