Detailed information of component protein
Summary
| Component ID | T6CP015528 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01236  (Type i5) |
| Strain | Vibrio vulnificus 106-2A |
| Replicon | chromosome |
| Sequence | Protein sequence (171 a.a.); Nucleotide sequence (513 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VV1062A_RS02925 |
| Coordinate (Strand) | 443822..444334 (-) |
| NCBI ID | WP_045619402.1 |
| RefSeq | NZ_LMTD01000002 |
| Uniprot ID | A0A2S3R7P1_VIBVL |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1e-60 | 9..162 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-170 | MTSIHSKLSRVRKPRVHITYDVETEGASLKKELPFVVGVMGDFAAHNIEALKPLKDRRFIQIDRDNFDDVLKKMSPSVSFRVKNTMVNDGTEFAVNLQFQSMKDFEPAAIVNQVDPLRHLMETRNKLRDLMTKVDRSEELENVLEAVLNNSDNLSKLADELKLGQEEKAE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9975 | - | - |
Protein sequence: 171 a.a.
>T6CP015528 NZ_LMTD01000002:c444334-443822 [Vibrio vulnificus] [TssB]
MTSIHSKLSRVRKPRVHITYDVETEGASLKKELPFVVGVMGDFAAHNIEALKPLKDRRFIQIDRDNFDDVLKKMSPSVSF
RVKNTMVNDGTEFAVNLQFQSMKDFEPAAIVNQVDPLRHLMETRNKLRDLMTKVDRSEELENVLEAVLNNSDNLSKLADE
LKLGQEEKAE*
MTSIHSKLSRVRKPRVHITYDVETEGASLKKELPFVVGVMGDFAAHNIEALKPLKDRRFIQIDRDNFDDVLKKMSPSVSF
RVKNTMVNDGTEFAVNLQFQSMKDFEPAAIVNQVDPLRHLMETRNKLRDLMTKVDRSEELENVLEAVLNNSDNLSKLADE
LKLGQEEKAE*
Nucleotide sequence: 513 bp
>T6CP015528 NZ_LMTD01000002:c444334-443822 [Vibrio vulnificus] [TssB]
ATGACTAGTATCCACTCGAAGTTATCGCGAGTACGGAAGCCACGTGTTCATATTACCTATGACGTAGAGACTGAAGGGGC
TTCTCTTAAAAAAGAGCTTCCATTTGTAGTGGGTGTGATGGGGGATTTTGCTGCCCACAATATAGAGGCACTTAAGCCGC
TTAAAGATAGAAGATTTATTCAAATTGATCGAGACAACTTTGATGATGTTCTTAAAAAAATGAGCCCTTCGGTATCTTTC
AGAGTAAAAAATACGATGGTAAATGATGGAACAGAGTTTGCGGTCAATCTGCAGTTTCAATCAATGAAAGATTTTGAGCC
TGCAGCCATTGTTAATCAGGTTGATCCACTTCGTCATTTGATGGAAACAAGGAACAAGTTACGAGACTTGATGACAAAAG
TGGATCGTTCAGAAGAGCTTGAAAATGTTCTTGAAGCGGTTTTGAACAACAGTGACAACTTATCTAAATTGGCTGATGAA
CTCAAGTTAGGCCAAGAAGAGAAAGCGGAGTAA
ATGACTAGTATCCACTCGAAGTTATCGCGAGTACGGAAGCCACGTGTTCATATTACCTATGACGTAGAGACTGAAGGGGC
TTCTCTTAAAAAAGAGCTTCCATTTGTAGTGGGTGTGATGGGGGATTTTGCTGCCCACAATATAGAGGCACTTAAGCCGC
TTAAAGATAGAAGATTTATTCAAATTGATCGAGACAACTTTGATGATGTTCTTAAAAAAATGAGCCCTTCGGTATCTTTC
AGAGTAAAAAATACGATGGTAAATGATGGAACAGAGTTTGCGGTCAATCTGCAGTTTCAATCAATGAAAGATTTTGAGCC
TGCAGCCATTGTTAATCAGGTTGATCCACTTCGTCATTTGATGGAAACAAGGAACAAGTTACGAGACTTGATGACAAAAG
TGGATCGTTCAGAAGAGCTTGAAAATGTTCTTGAAGCGGTTTTGAACAACAGTGACAACTTATCTAAATTGGCTGATGAA
CTCAAGTTAGGCCAAGAAGAGAAAGCGGAGTAA