Detailed information of component protein


Summary

Component ID T6CP015528
Component protein type TssB
T6SS ID (Type) T6SS01236 experimental (Type i5)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (171 a.a.); Nucleotide sequence (513 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) VV1062A_RS02925
Coordinate (Strand) 443822..444334 (-)
NCBI ID WP_045619402.1
RefSeq NZ_LMTD01000002
Uniprot ID A0A2S3R7P1_VIBVL
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 1e-60 9..162

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-170 MTSIHSKLSRVRKPRVHITYDVETEGASLKKELPFVVGVMGDFAAHNIEALKPLKDRRFIQIDRDNFDDVLKKMSPSVSFRVKNTMVNDGTEFAVNLQFQSMKDFEPAAIVNQVDPLRHLMETRNKLRDLMTKVDRSEELENVLEAVLNNSDNLSKLADELKLGQEEKAE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9975 - -



  Protein sequence: 171 a.a.    

>T6CP015528 NZ_LMTD01000002:c444334-443822 [Vibrio vulnificus] [TssB]
MTSIHSKLSRVRKPRVHITYDVETEGASLKKELPFVVGVMGDFAAHNIEALKPLKDRRFIQIDRDNFDDVLKKMSPSVSF
RVKNTMVNDGTEFAVNLQFQSMKDFEPAAIVNQVDPLRHLMETRNKLRDLMTKVDRSEELENVLEAVLNNSDNLSKLADE
LKLGQEEKAE*

  Nucleotide sequence: 513 bp    

>T6CP015528 NZ_LMTD01000002:c444334-443822 [Vibrio vulnificus] [TssB]
ATGACTAGTATCCACTCGAAGTTATCGCGAGTACGGAAGCCACGTGTTCATATTACCTATGACGTAGAGACTGAAGGGGC
TTCTCTTAAAAAAGAGCTTCCATTTGTAGTGGGTGTGATGGGGGATTTTGCTGCCCACAATATAGAGGCACTTAAGCCGC
TTAAAGATAGAAGATTTATTCAAATTGATCGAGACAACTTTGATGATGTTCTTAAAAAAATGAGCCCTTCGGTATCTTTC
AGAGTAAAAAATACGATGGTAAATGATGGAACAGAGTTTGCGGTCAATCTGCAGTTTCAATCAATGAAAGATTTTGAGCC
TGCAGCCATTGTTAATCAGGTTGATCCACTTCGTCATTTGATGGAAACAAGGAACAAGTTACGAGACTTGATGACAAAAG
TGGATCGTTCAGAAGAGCTTGAAAATGTTCTTGAAGCGGTTTTGAACAACAGTGACAACTTATCTAAATTGGCTGATGAA
CTCAAGTTAGGCCAAGAAGAGAAAGCGGAGTAA