Detailed information of component protein


Summary

Component ID T6CP015534
Component protein type TssK
T6SS ID (Type) T6SS01236 experimental (Type i5)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (441 a.a.); Nucleotide sequence (1323 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS02955
Coordinate (Strand) 451805..453127 (-)
NCBI ID 782731362
RefSeq NZ_LMTD01000002
Uniprot ID A0A2S3R7Q8_VIBVL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 3.7e-128 19..438
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-440 MSVYSPIVWSEGMFLRPQHFQQQERALSHEYKGLTRLVGCYARGIESFSLDKEQLKEGVVSLTECVGIFSDMTFVNIPIKEQLPEPLKIEPGIENTLVQLVIPAEKSQGQNVSHSETSMVTRYKVVDHTLTDSVSGDEEVLQLAALKCELKATNDNLPGYVSLPLVKIRHVGSEGQVILDEEFVPPFLNVHHSSLLTRYLNNVLAMIKIRADAIASRLGQGKSASSSAVDFIMLQMLNRYEANLRHLSKGSELHPHELATALLSLIGELSTFSSKNKRVPKLPEYQHSNLGPVFSEMNQILSQYLSVVLEQTATKMPLDIRQFGIRVTPLPDKSLLSLCQFVLAVKADVSADEIRKKLPGQIKVGPAENIRDLINNQINGIAVSPLNVVPRQMPYAAGYVYFELVKQGAYWARLNESGGMAFHVSGNYPGLEMELWSINQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9912 - -


  Protein sequence: 441 a.a.    

>T6CP015534 NZ_LMTD01000002:c453127-451805 [Vibrio vulnificus] [TssK]
MSVYSPIVWSEGMFLRPQHFQQQERALSHEYKGLTRLVGCYARGIESFSLDKEQLKEGVVSLTECVGIFSDMTFVNIPIK
EQLPEPLKIEPGIENTLVQLVIPAEKSQGQNVSHSETSMVTRYKVVDHTLTDSVSGDEEVLQLAALKCELKATNDNLPGY
VSLPLVKIRHVGSEGQVILDEEFVPPFLNVHHSSLLTRYLNNVLAMIKIRADAIASRLGQGKSASSSAVDFIMLQMLNRY
EANLRHLSKGSELHPHELATALLSLIGELSTFSSKNKRVPKLPEYQHSNLGPVFSEMNQILSQYLSVVLEQTATKMPLDI
RQFGIRVTPLPDKSLLSLCQFVLAVKADVSADEIRKKLPGQIKVGPAENIRDLINNQINGIAVSPLNVVPRQMPYAAGYV
YFELVKQGAYWARLNESGGMAFHVSGNYPGLEMELWSINQ*

  Nucleotide sequence: 1323 bp    

>T6CP015534 NZ_LMTD01000002:c453127-451805 [Vibrio vulnificus] [TssK]
ATGAGTGTTTATTCACCGATTGTTTGGAGTGAAGGGATGTTTCTGCGTCCTCAACACTTTCAGCAACAAGAGCGAGCGTT
GTCTCATGAATACAAAGGTCTAACGCGTTTAGTAGGTTGTTATGCCCGAGGAATTGAATCGTTTTCTCTCGACAAAGAAC
AGTTGAAAGAAGGGGTTGTATCGCTAACTGAGTGTGTTGGAATTTTCTCCGATATGACATTCGTTAACATACCTATTAAA
GAGCAGCTTCCTGAGCCACTCAAAATTGAGCCAGGGATTGAAAATACTTTGGTTCAGCTTGTGATACCTGCAGAAAAATC
CCAAGGCCAAAACGTTTCCCATTCCGAGACTTCAATGGTAACGCGCTATAAGGTGGTTGATCACACCTTAACCGATAGCG
TGTCTGGTGATGAAGAAGTACTTCAACTCGCTGCGCTTAAGTGCGAGTTAAAGGCAACCAATGACAATTTGCCGGGCTAT
GTCTCTTTGCCACTGGTGAAAATTCGTCATGTTGGTAGCGAAGGTCAAGTCATTCTTGATGAAGAGTTCGTACCACCTTT
CCTTAATGTCCACCATAGTTCGCTGCTTACTCGTTATCTGAATAACGTTTTAGCCATGATCAAAATTAGGGCAGACGCCA
TTGCAAGTCGTCTCGGACAAGGCAAGTCAGCGTCTTCCTCTGCAGTAGATTTCATTATGCTACAGATGCTGAATCGTTAT
GAGGCTAATTTAAGACATTTATCGAAAGGGAGTGAGCTTCATCCACATGAGTTAGCGACGGCCTTATTGAGCTTAATTGG
TGAGCTGTCCACTTTTTCGAGTAAAAATAAGCGAGTCCCTAAGCTTCCCGAATACCAACACAGTAATTTGGGGCCTGTCT
TTTCTGAGATGAATCAAATCCTCAGTCAATATCTGAGTGTGGTATTGGAGCAAACTGCGACCAAGATGCCCTTGGATATT
CGCCAGTTTGGGATTCGCGTTACGCCATTACCAGATAAAAGTTTGCTTTCACTTTGTCAGTTTGTATTGGCCGTTAAAGC
CGATGTCTCTGCCGATGAAATTAGAAAAAAGTTACCAGGACAAATCAAAGTTGGACCCGCAGAGAATATTCGCGACCTTA
TCAATAATCAGATCAACGGTATTGCCGTTTCGCCACTGAATGTGGTGCCAAGACAGATGCCTTACGCAGCAGGCTATGTC
TATTTTGAGCTGGTTAAACAAGGCGCTTATTGGGCTCGTTTAAATGAAAGTGGGGGAATGGCATTTCATGTCTCTGGTAA
TTACCCAGGGTTAGAAATGGAGCTTTGGAGTATTAACCAATAA