Detailed information of component protein


Summary

Component ID T6CP015526
Component protein type TssC
T6SS ID (Type) T6SS01236 experimental (Type i5)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (498 a.a.); Nucleotide sequence (1494 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS02915
Coordinate (Strand) 440779..442272 (-)
NCBI ID 782722927
RefSeq NZ_LMTD01000002
Uniprot ID A0A2S3R7R8_VIBVL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 3.5e-104 61..371
VipB_2 PF18945.2 2.6e-42 381..491
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-497 MNFIEIEQLSHDLPTPESALENGIWMAHFLDAKTMTQIVSYWVEISGAKTKQEFVHSIISAIESIDRKVTTQLDEILHHRKMQKLEATWRGLNYLVQQKDHNAGEFVKVKVLSCTWEELKKDSERAIEFDQSALFKLVYQNEYSMPGGEPFGLLIGDYYLCGGQNAMVVEREINILRKIAQSAAAAFSPFIMSVKPSVFGSDYFENIASMTNVYAQFEQNEYVSWKRLRAEEDVRFIGLTLPNLLYRQPYQSDGSRSDSFVYNERIRDSHQDLLWGNAAYSFAAVIVRAFQEHGWFTHIRGHKTGDYSQGIIQPPSLCQVDLPGKGGRYRAPLNLKITEKREQELADCGFIPLSPVAETPFVSFTSNISLHKPQQFASKGASVNARLSSMLQYTLCVSRIAHYLKVMGRDRIGSYQDAQSIERDFQAWLHKYTTASDEASDELRAKYPLNEAKIKVTEKLGSPGKYYSVIHLRPHFQLDQMVSSIKLITELSPEHIV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9967 - -


  Protein sequence: 498 a.a.    

>T6CP015526 NZ_LMTD01000002:c442272-440779 [Vibrio vulnificus] [TssC]
MNFIEIEQLSHDLPTPESALENGIWMAHFLDAKTMTQIVSYWVEISGAKTKQEFVHSIISAIESIDRKVTTQLDEILHHR
KMQKLEATWRGLNYLVQQKDHNAGEFVKVKVLSCTWEELKKDSERAIEFDQSALFKLVYQNEYSMPGGEPFGLLIGDYYL
CGGQNAMVVEREINILRKIAQSAAAAFSPFIMSVKPSVFGSDYFENIASMTNVYAQFEQNEYVSWKRLRAEEDVRFIGLT
LPNLLYRQPYQSDGSRSDSFVYNERIRDSHQDLLWGNAAYSFAAVIVRAFQEHGWFTHIRGHKTGDYSQGIIQPPSLCQV
DLPGKGGRYRAPLNLKITEKREQELADCGFIPLSPVAETPFVSFTSNISLHKPQQFASKGASVNARLSSMLQYTLCVSRI
AHYLKVMGRDRIGSYQDAQSIERDFQAWLHKYTTASDEASDELRAKYPLNEAKIKVTEKLGSPGKYYSVIHLRPHFQLDQ
MVSSIKLITELSPEHIV*

  Nucleotide sequence: 1494 bp    

>T6CP015526 NZ_LMTD01000002:c442272-440779 [Vibrio vulnificus] [TssC]
ATGAATTTCATCGAAATTGAACAACTTTCCCACGATTTACCGACACCAGAGTCTGCTTTGGAAAATGGTATTTGGATGGC
GCATTTTCTTGATGCCAAGACGATGACGCAGATAGTGAGCTATTGGGTTGAGATTTCTGGGGCGAAAACGAAACAAGAGT
TTGTTCACAGCATCATCAGTGCCATTGAATCGATTGACAGGAAAGTTACTACTCAACTGGATGAGATTCTGCATCACCGA
AAAATGCAAAAGCTTGAAGCGACGTGGCGAGGCTTAAATTACCTTGTGCAGCAGAAAGATCACAATGCCGGAGAGTTTGT
AAAGGTCAAAGTTCTGTCTTGTACGTGGGAAGAGCTGAAGAAAGACAGTGAGCGTGCGATAGAGTTCGATCAATCAGCAC
TGTTTAAATTGGTCTATCAAAACGAATACTCGATGCCAGGGGGAGAGCCGTTTGGTTTATTGATTGGCGACTATTATCTC
TGTGGCGGTCAAAACGCAATGGTGGTTGAAAGAGAAATCAACATATTAAGGAAAATTGCGCAGTCGGCAGCGGCGGCGTT
TAGCCCTTTCATCATGTCGGTCAAACCGAGTGTTTTTGGTTCAGATTACTTTGAAAACATCGCGTCGATGACGAACGTGT
ATGCCCAATTTGAGCAAAACGAATACGTGAGTTGGAAACGACTACGAGCTGAAGAGGATGTTCGGTTTATTGGTTTAACG
CTACCCAACCTTTTGTATCGTCAGCCATATCAAAGTGATGGTTCGAGATCGGATTCTTTTGTTTATAACGAACGAATTCG
AGATTCGCACCAAGATTTGTTGTGGGGAAATGCCGCCTATTCCTTTGCCGCGGTCATTGTTAGAGCATTTCAAGAGCATG
GTTGGTTTACACACATACGTGGACATAAAACAGGGGACTACTCTCAAGGCATTATCCAGCCTCCTTCTTTATGTCAGGTT
GATTTACCAGGAAAAGGAGGGCGATATCGCGCACCTCTCAACTTAAAAATAACGGAAAAAAGAGAGCAAGAGTTGGCAGA
TTGTGGATTTATCCCTCTGTCTCCCGTCGCTGAAACGCCTTTTGTTAGCTTTACCTCGAACATCTCTTTGCACAAACCTC
AGCAGTTTGCTTCCAAGGGAGCCAGTGTAAATGCACGTTTGTCTTCGATGTTGCAATACACCTTATGTGTTTCAAGAATT
GCTCACTATTTAAAAGTGATGGGAAGAGATCGGATTGGCAGCTATCAAGATGCCCAATCGATAGAACGAGATTTTCAGGC
GTGGCTTCATAAATATACCACTGCGTCTGATGAGGCATCGGATGAACTGAGAGCAAAATATCCGCTCAACGAAGCCAAAA
TAAAAGTCACTGAAAAGCTAGGTAGCCCAGGAAAATATTATTCGGTGATCCACCTACGGCCCCATTTTCAACTGGATCAA
ATGGTTTCATCGATCAAGTTGATTACGGAGCTGTCTCCTGAGCATATTGTATAA