Detailed information of component protein


Summary

Component ID T6CP015522
Component protein type TssG
T6SS ID (Type) T6SS01236 experimental (Type i5)
Strain Vibrio vulnificus 106-2A
Replicon chromosome
Sequence Protein sequence (322 a.a.); Nucleotide sequence (966 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VV1062A_RS02895
Coordinate (Strand) 436710..437675 (-)
NCBI ID 1119684973
RefSeq NZ_LMTD01000002
Uniprot ID UPI00092C2557
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.3e-59 13..306
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-321 MKSEDFLAEIESLPLFTAIHLIETHLLQADSHLGSDALPKNEKIQLTVSQRLGYEARELINVVSNSQSNKLTLQTNIIGLTGEQGVLPSHYSELVMQRARENDTAMKDFFDIFNHRLLSLYYRCWLSYQLAAQFRSKKNIQSSPIQKVLSSLTGNCGSEAIFWGGVFSTKQRSRGFVKNIVEFYTDCEVLIDELRGEWVHMDEDDQTRLCGRNLVEGQHSALGLGAVIGKRIWDVSGGITILLLPKDSEVVYRILSKGGLDHIKSLVTKIVGAEKTIQWKLRARYEQLPKASLKRGIGCIGRGSILKVGSPMNKRFITITV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9554 - -


  Protein sequence: 322 a.a.    

>T6CP015522 NZ_LMTD01000002:c437675-436710 [Vibrio vulnificus] [TssG]
MKSEDFLAEIESLPLFTAIHLIETHLLQADSHLGSDALPKNEKIQLTVSQRLGYEARELINVVSNSQSNKLTLQTNIIGL
TGEQGVLPSHYSELVMQRARENDTAMKDFFDIFNHRLLSLYYRCWLSYQLAAQFRSKKNIQSSPIQKVLSSLTGNCGSEA
IFWGGVFSTKQRSRGFVKNIVEFYTDCEVLIDELRGEWVHMDEDDQTRLCGRNLVEGQHSALGLGAVIGKRIWDVSGGIT
ILLLPKDSEVVYRILSKGGLDHIKSLVTKIVGAEKTIQWKLRARYEQLPKASLKRGIGCIGRGSILKVGSPMNKRFITIT
V*

  Nucleotide sequence: 966 bp    

>T6CP015522 NZ_LMTD01000002:c437675-436710 [Vibrio vulnificus] [TssG]
ATGAAAAGTGAAGATTTTCTCGCTGAGATTGAATCGCTACCTCTCTTTACCGCGATACATTTGATAGAGACTCATCTACT
TCAGGCTGATAGTCATCTGGGTTCTGATGCGTTGCCAAAGAATGAAAAAATCCAACTCACAGTCTCGCAACGTTTAGGTT
ATGAAGCGCGAGAGCTGATAAATGTCGTGTCAAATAGCCAGAGTAATAAATTAACCTTACAAACCAACATCATCGGTTTA
ACCGGTGAGCAGGGGGTACTGCCGAGCCATTACAGCGAGCTGGTTATGCAAAGGGCGCGTGAAAATGACACGGCTATGAA
GGATTTCTTCGACATTTTTAACCACAGACTGCTCTCTCTCTACTATCGATGTTGGCTATCTTATCAGTTGGCTGCTCAGT
TCAGATCTAAAAAGAACATTCAATCTTCACCGATTCAAAAGGTTCTCTCTTCATTAACTGGAAATTGTGGTAGTGAGGCA
ATTTTCTGGGGAGGAGTGTTTTCTACCAAGCAAAGAAGCCGAGGTTTCGTTAAGAACATTGTTGAGTTTTATACTGATTG
TGAAGTGCTAATTGACGAACTGAGAGGAGAGTGGGTGCATATGGACGAAGATGATCAGACGCGTCTTTGTGGCAGAAACT
TGGTTGAAGGACAGCATTCAGCATTAGGTTTAGGTGCGGTTATTGGTAAACGTATTTGGGATGTAAGTGGTGGCATTACA
ATTTTGCTATTACCTAAGGACTCTGAAGTTGTTTATAGAATACTCAGCAAGGGAGGTTTAGATCATATCAAAAGTTTGGT
AACAAAAATTGTCGGCGCGGAAAAAACGATTCAATGGAAACTAAGAGCTAGATATGAACAACTTCCAAAAGCAAGTCTTA
AAAGAGGCATAGGGTGTATAGGTAGAGGCAGTATTCTAAAAGTCGGATCACCAATGAATAAAAGATTTATCACAATCACA
GTTTAA