Detailed information of component protein
Summary
| Component ID | T6CP015530 |
| Component protein type | PppA |
| T6SS ID (Type) | T6SS01236  (Type i5) |
| Strain | Vibrio vulnificus 106-2A |
| Replicon | chromosome |
| Sequence | Protein sequence (265 a.a.); Nucleotide sequence (795 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VV1062A_RS02935 |
| Coordinate (Strand) | 445484..446278 (-) |
| NCBI ID | 1847663389 |
| RefSeq | NZ_LMTD01000002 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| PP2C_2 | PF13672.8 | 1.5e-16 | 20..207 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-264 | MSWSFFTFSKTHAGKVRPYNEDALLDMTARRVWVVADGMGGHSAGDVASQMLVDRIERFVLDTPDFGIDELRQMIEVANREIFQYAQVHLDGKTMGSTVVLLFLQDGYFHCLWVGDSRIYLLRDNHLVQKTRDHSQVMELVEQGLLAEEDAEKHPLANVITRAVGVEETVRIDQQSGQLLHGDQFLLCSDGLTKELSDSEIHQIMCADSVNQSGLALLHASLVRGANDNVTCALIKVAKEKQLVQESVSHSSDATVPVYARRRV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9646 | - | - |
Protein sequence: 265 a.a.
>T6CP015530 NZ_LMTD01000002:c446278-445484 [Vibrio vulnificus] [PppA]
MSWSFFTFSKTHAGKVRPYNEDALLDMTARRVWVVADGMGGHSAGDVASQMLVDRIERFVLDTPDFGIDELRQMIEVANR
EIFQYAQVHLDGKTMGSTVVLLFLQDGYFHCLWVGDSRIYLLRDNHLVQKTRDHSQVMELVEQGLLAEEDAEKHPLANVI
TRAVGVEETVRIDQQSGQLLHGDQFLLCSDGLTKELSDSEIHQIMCADSVNQSGLALLHASLVRGANDNVTCALIKVAKE
KQLVQESVSHSSDATVPVYARRRV*
MSWSFFTFSKTHAGKVRPYNEDALLDMTARRVWVVADGMGGHSAGDVASQMLVDRIERFVLDTPDFGIDELRQMIEVANR
EIFQYAQVHLDGKTMGSTVVLLFLQDGYFHCLWVGDSRIYLLRDNHLVQKTRDHSQVMELVEQGLLAEEDAEKHPLANVI
TRAVGVEETVRIDQQSGQLLHGDQFLLCSDGLTKELSDSEIHQIMCADSVNQSGLALLHASLVRGANDNVTCALIKVAKE
KQLVQESVSHSSDATVPVYARRRV*
Nucleotide sequence: 795 bp
>T6CP015530 NZ_LMTD01000002:c446278-445484 [Vibrio vulnificus] [PppA]
ATGAGTTGGAGTTTCTTTACATTTTCCAAGACACACGCAGGTAAAGTCCGCCCTTACAACGAGGATGCGCTGTTGGATAT
GACCGCAAGGCGTGTATGGGTCGTTGCAGATGGCATGGGGGGGCACTCAGCTGGCGATGTTGCGAGCCAAATGCTTGTCG
ATCGCATTGAAAGATTTGTTCTCGACACACCAGATTTCGGCATCGATGAATTGCGTCAGATGATCGAAGTGGCCAATAGG
GAAATTTTCCAGTACGCCCAAGTTCACCTTGATGGCAAAACCATGGGTTCCACCGTTGTGCTGTTGTTCTTACAGGACGG
TTATTTCCATTGTCTCTGGGTTGGTGATAGCCGCATTTACCTACTCAGAGACAATCACTTGGTACAAAAGACACGAGATC
ACAGCCAAGTGATGGAGTTAGTTGAGCAGGGACTGCTAGCGGAAGAAGATGCAGAAAAGCATCCTTTAGCCAATGTAATA
ACGAGGGCGGTTGGCGTCGAAGAGACGGTGAGAATTGACCAACAGTCAGGGCAGCTGCTTCATGGCGATCAGTTTCTCCT
TTGCAGTGACGGTTTGACCAAAGAGCTAAGCGATAGCGAAATACATCAGATTATGTGTGCAGACTCGGTTAATCAGTCTG
GTCTTGCCCTTCTTCACGCCTCGTTAGTGCGGGGGGCAAATGACAATGTTACGTGCGCATTGATCAAAGTGGCCAAGGAA
AAGCAATTGGTTCAAGAGAGTGTGTCTCATTCGTCTGATGCAACGGTGCCAGTCTATGCAAGAAGGAGGGTGTAA
ATGAGTTGGAGTTTCTTTACATTTTCCAAGACACACGCAGGTAAAGTCCGCCCTTACAACGAGGATGCGCTGTTGGATAT
GACCGCAAGGCGTGTATGGGTCGTTGCAGATGGCATGGGGGGGCACTCAGCTGGCGATGTTGCGAGCCAAATGCTTGTCG
ATCGCATTGAAAGATTTGTTCTCGACACACCAGATTTCGGCATCGATGAATTGCGTCAGATGATCGAAGTGGCCAATAGG
GAAATTTTCCAGTACGCCCAAGTTCACCTTGATGGCAAAACCATGGGTTCCACCGTTGTGCTGTTGTTCTTACAGGACGG
TTATTTCCATTGTCTCTGGGTTGGTGATAGCCGCATTTACCTACTCAGAGACAATCACTTGGTACAAAAGACACGAGATC
ACAGCCAAGTGATGGAGTTAGTTGAGCAGGGACTGCTAGCGGAAGAAGATGCAGAAAAGCATCCTTTAGCCAATGTAATA
ACGAGGGCGGTTGGCGTCGAAGAGACGGTGAGAATTGACCAACAGTCAGGGCAGCTGCTTCATGGCGATCAGTTTCTCCT
TTGCAGTGACGGTTTGACCAAAGAGCTAAGCGATAGCGAAATACATCAGATTATGTGTGCAGACTCGGTTAATCAGTCTG
GTCTTGCCCTTCTTCACGCCTCGTTAGTGCGGGGGGCAAATGACAATGTTACGTGCGCATTGATCAAAGTGGCCAAGGAA
AAGCAATTGGTTCAAGAGAGTGTGTCTCATTCGTCTGATGCAACGGTGCCAGTCTATGCAAGAAGGAGGGTGTAA