Detailed information of component protein
Summary
| Component ID | T6CP015525 |
| Component protein type | ImpE |
| T6SS ID (Type) | T6SS01236  (Type i5) |
| Strain | Vibrio vulnificus 106-2A |
| Replicon | chromosome |
| Sequence | Protein sequence (268 a.a.); Nucleotide sequence (804 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VV1062A_RS02910 |
| Coordinate (Strand) | 439965..440768 (-) |
| NCBI ID | 1119698324 |
| RefSeq | NZ_LMTD01000002 |
| Uniprot ID | UPI00092711B9 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpE | PF07024.15 | 1.1e-31 | 140..258 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-267 | MSDWQDHLSRSELELAKEALIKEIKLEPKNATIRSKFIELLCIMGEFERADEQLMQSIKLFPEYLPGASQIRHLVKAAQARKDFFAGAASAQFIEGAEKLGETIVQFILAQKENNHEELLSVCERAEQSRQELQFEINGVRYDDVRDLDDRLGGFIELFSSAGNYFLVPMDHIHYLELKPATNMLETLWRPCEFDIQGLGEGEAHFPMTYVDSESGNQKLGRETDWKNVLGTDHCIGQGQKMWLGGDNALALSQLERVALAVETMIE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9963 | - | - |
Protein sequence: 268 a.a.
>T6CP015525 NZ_LMTD01000002:c440768-439965 [Vibrio vulnificus] [ImpE]
MSDWQDHLSRSELELAKEALIKEIKLEPKNATIRSKFIELLCIMGEFERADEQLMQSIKLFPEYLPGASQIRHLVKAAQA
RKDFFAGAASAQFIEGAEKLGETIVQFILAQKENNHEELLSVCERAEQSRQELQFEINGVRYDDVRDLDDRLGGFIELFS
SAGNYFLVPMDHIHYLELKPATNMLETLWRPCEFDIQGLGEGEAHFPMTYVDSESGNQKLGRETDWKNVLGTDHCIGQGQ
KMWLGGDNALALSQLERVALAVETMIE*
MSDWQDHLSRSELELAKEALIKEIKLEPKNATIRSKFIELLCIMGEFERADEQLMQSIKLFPEYLPGASQIRHLVKAAQA
RKDFFAGAASAQFIEGAEKLGETIVQFILAQKENNHEELLSVCERAEQSRQELQFEINGVRYDDVRDLDDRLGGFIELFS
SAGNYFLVPMDHIHYLELKPATNMLETLWRPCEFDIQGLGEGEAHFPMTYVDSESGNQKLGRETDWKNVLGTDHCIGQGQ
KMWLGGDNALALSQLERVALAVETMIE*
Nucleotide sequence: 804 bp
>T6CP015525 NZ_LMTD01000002:c440768-439965 [Vibrio vulnificus] [ImpE]
ATGTCAGATTGGCAAGACCACCTCAGTCGAAGCGAGCTCGAACTCGCCAAAGAAGCGCTGATTAAAGAAATCAAATTGGA
GCCCAAAAACGCCACTATTCGCAGCAAGTTTATTGAACTGCTATGCATCATGGGCGAGTTTGAGCGCGCGGATGAACAGT
TAATGCAGTCCATTAAGTTGTTCCCTGAGTATTTACCCGGTGCAAGCCAAATTCGTCATCTGGTTAAAGCCGCTCAAGCA
AGAAAGGACTTTTTTGCAGGCGCCGCATCAGCGCAATTCATAGAGGGTGCCGAAAAACTGGGTGAAACGATTGTTCAGTT
CATTTTGGCGCAAAAAGAGAACAACCATGAGGAACTGCTCTCGGTGTGTGAGCGTGCAGAGCAATCCCGTCAAGAACTCC
AATTTGAAATTAATGGTGTGCGCTATGATGATGTGAGAGATCTCGATGATCGATTAGGGGGCTTCATTGAGCTCTTTTCT
TCCGCAGGTAACTATTTCTTAGTTCCGATGGACCATATCCATTACTTGGAGCTCAAACCAGCAACCAACATGTTGGAAAC
ACTATGGCGACCATGCGAGTTCGATATTCAAGGACTTGGCGAAGGTGAAGCTCATTTCCCAATGACGTACGTAGATTCCG
AAAGTGGCAACCAAAAACTGGGCAGAGAAACGGACTGGAAAAATGTTCTAGGTACGGATCACTGTATCGGTCAAGGGCAA
AAGATGTGGCTGGGTGGTGACAATGCGCTTGCTTTGAGCCAATTAGAACGAGTCGCCTTAGCTGTGGAAACCATGATTGA
ATGA
ATGTCAGATTGGCAAGACCACCTCAGTCGAAGCGAGCTCGAACTCGCCAAAGAAGCGCTGATTAAAGAAATCAAATTGGA
GCCCAAAAACGCCACTATTCGCAGCAAGTTTATTGAACTGCTATGCATCATGGGCGAGTTTGAGCGCGCGGATGAACAGT
TAATGCAGTCCATTAAGTTGTTCCCTGAGTATTTACCCGGTGCAAGCCAAATTCGTCATCTGGTTAAAGCCGCTCAAGCA
AGAAAGGACTTTTTTGCAGGCGCCGCATCAGCGCAATTCATAGAGGGTGCCGAAAAACTGGGTGAAACGATTGTTCAGTT
CATTTTGGCGCAAAAAGAGAACAACCATGAGGAACTGCTCTCGGTGTGTGAGCGTGCAGAGCAATCCCGTCAAGAACTCC
AATTTGAAATTAATGGTGTGCGCTATGATGATGTGAGAGATCTCGATGATCGATTAGGGGGCTTCATTGAGCTCTTTTCT
TCCGCAGGTAACTATTTCTTAGTTCCGATGGACCATATCCATTACTTGGAGCTCAAACCAGCAACCAACATGTTGGAAAC
ACTATGGCGACCATGCGAGTTCGATATTCAAGGACTTGGCGAAGGTGAAGCTCATTTCCCAATGACGTACGTAGATTCCG
AAAGTGGCAACCAAAAACTGGGCAGAGAAACGGACTGGAAAAATGTTCTAGGTACGGATCACTGTATCGGTCAAGGGCAA
AAGATGTGGCTGGGTGGTGACAATGCGCTTGCTTTGAGCCAATTAGAACGAGTCGCCTTAGCTGTGGAAACCATGATTGA
ATGA