Detailed information of component protein
Summary
| Component ID | T6CP015524 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01236  (Type i5) |
| Strain | Vibrio vulnificus 106-2A |
| Replicon | chromosome |
| Sequence | Protein sequence (158 a.a.); Nucleotide sequence (474 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VV1062A_RS02905 |
| Coordinate (Strand) | 439495..439968 (-) |
| NCBI ID | 515992149 |
| RefSeq | NZ_LMTD01000002 |
| Uniprot ID | A0A2S3R7R4_VIBVL |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 7.1e-16 | 33..133 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-157 | MSETGLVPSLMDKLTDSDPLSSIDRDFPLTRHALMDSLRRDLESLLNSRINWMTLSDELREIQTSILRYGLPDFSSMPFSSTDGQQVLCQRVKETIQQYEPRLNYVSVVIAEDKNPLDRILKLRIKATCMIDNNEQELVMDSEVEPVSLGIKLSRAK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9958 | - | - |
Protein sequence: 158 a.a.
>T6CP015524 NZ_LMTD01000002:c439968-439495 [Vibrio vulnificus] [TssE]
MSETGLVPSLMDKLTDSDPLSSIDRDFPLTRHALMDSLRRDLESLLNSRINWMTLSDELREIQTSILRYGLPDFSSMPFS
STDGQQVLCQRVKETIQQYEPRLNYVSVVIAEDKNPLDRILKLRIKATCMIDNNEQELVMDSEVEPVSLGIKLSRAK*
MSETGLVPSLMDKLTDSDPLSSIDRDFPLTRHALMDSLRRDLESLLNSRINWMTLSDELREIQTSILRYGLPDFSSMPFS
STDGQQVLCQRVKETIQQYEPRLNYVSVVIAEDKNPLDRILKLRIKATCMIDNNEQELVMDSEVEPVSLGIKLSRAK*
Nucleotide sequence: 474 bp
>T6CP015524 NZ_LMTD01000002:c439968-439495 [Vibrio vulnificus] [TssE]
ATGAGTGAAACAGGTCTAGTCCCATCCCTCATGGATAAATTGACGGACAGTGATCCTCTGAGCAGCATTGATAGAGACTT
TCCATTAACGCGACATGCGTTGATGGATTCACTAAGACGAGATCTTGAATCATTGTTGAACAGCCGTATCAACTGGATGA
CGTTGTCAGATGAGTTACGTGAAATACAGACGTCTATCTTGCGATATGGTTTGCCAGATTTCTCGTCAATGCCATTTAGC
AGTACGGATGGGCAACAGGTTCTGTGCCAACGAGTGAAAGAAACCATTCAACAGTATGAACCTAGGCTCAACTATGTGTC
GGTCGTCATTGCAGAAGACAAAAATCCGTTAGATCGAATTTTAAAACTCAGAATCAAGGCGACCTGCATGATTGACAATA
ACGAGCAGGAGTTGGTTATGGATTCGGAAGTTGAGCCCGTCAGTCTAGGGATAAAACTGAGTAGAGCGAAATGA
ATGAGTGAAACAGGTCTAGTCCCATCCCTCATGGATAAATTGACGGACAGTGATCCTCTGAGCAGCATTGATAGAGACTT
TCCATTAACGCGACATGCGTTGATGGATTCACTAAGACGAGATCTTGAATCATTGTTGAACAGCCGTATCAACTGGATGA
CGTTGTCAGATGAGTTACGTGAAATACAGACGTCTATCTTGCGATATGGTTTGCCAGATTTCTCGTCAATGCCATTTAGC
AGTACGGATGGGCAACAGGTTCTGTGCCAACGAGTGAAAGAAACCATTCAACAGTATGAACCTAGGCTCAACTATGTGTC
GGTCGTCATTGCAGAAGACAAAAATCCGTTAGATCGAATTTTAAAACTCAGAATCAAGGCGACCTGCATGATTGACAATA
ACGAGCAGGAGTTGGTTATGGATTCGGAAGTTGAGCCCGTCAGTCTAGGGATAAAACTGAGTAGAGCGAAATGA